25 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00690	DNA-directed RNA polymerases I. (231 aa)
	VDAG_00696	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (122 aa)
	VDAG_00994	DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
	VDAG_01908	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (110 aa)
	VDAG_02595	DNA-dependent RNA polymerase I subunit A43. (486 aa)
	VDAG_03280	DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide. (174 aa)
	VDAG_03035	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1231 aa)
	VDAG_04053	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (666 aa)
	VDAG_04242	DNA-directed RNA polymerases I and III subunit RPAC1. (375 aa)
	VDAG_04392	DNA-directed RNA polymerase II subunit RPB7. (171 aa)
	VDAG_05625	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
	VDAG_05947	DNA-directed RNA polymerases I and III subunit RPAC2. (146 aa)
	VDAG_06451	DNA-directed RNA polymerases I. (149 aa)
	VDAG_06260	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (393 aa)
	VDAG_06114	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1755 aa)
	VDAG_06676	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1456 aa)
	VDAG_06975	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1160 aa)
	VDAG_07068	DNA-directed RNA polymerase II subunit RPB3. (342 aa)
	VDAG_07801	Metallothionein-I transcription activator. (81 aa)
	VDAG_08162	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (283 aa)
	VDAG_08329	Uncharacterized protein. (275 aa)
	VDAG_08425	DNA-directed RNA polymerase II. (151 aa)
	VDAG_08811	RPOL4c domain-containing protein. (160 aa)
	VDAG_09904	Uncharacterized protein. (406 aa)
	VDAG_10430	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00690	VDAG_00696	G2WQP8	G2WQQ4	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.997
VDAG_00690	VDAG_00994	G2WQP8	G2WT71	DNA-directed RNA polymerases I.	DNA-directed RNA polymerases I/II/III subunit 10.	0.999
VDAG_00690	VDAG_01908	G2WQP8	G2WWC2	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
VDAG_00690	VDAG_02595	G2WQP8	G2WYB3	DNA-directed RNA polymerases I.	DNA-dependent RNA polymerase I subunit A43.	0.999
VDAG_00690	VDAG_03035	G2WQP8	G2X012	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_00690	VDAG_03280	G2WQP8	G2WZ38	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide.	0.999
VDAG_00690	VDAG_04053	G2WQP8	G2X1C4	DNA-directed RNA polymerases I.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_00690	VDAG_04242	G2WQP8	G2X1R8	DNA-directed RNA polymerases I.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.999
VDAG_00690	VDAG_04392	G2WQP8	G2X268	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase II subunit RPB7.	0.999
VDAG_00690	VDAG_05625	G2WQP8	G2X5X0	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_00690	VDAG_05947	G2WQP8	G2X715	DNA-directed RNA polymerases I.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.999
VDAG_00690	VDAG_06114	G2WQP8	G2X8H3	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_00690	VDAG_06260	G2WQP8	G2X7Z3	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.999
VDAG_00690	VDAG_06451	G2WQP8	G2X7J3	DNA-directed RNA polymerases I.	DNA-directed RNA polymerases I.	0.999
VDAG_00690	VDAG_06676	G2WQP8	G2X944	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_00690	VDAG_06975	G2WQP8	G2XA72	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_00690	VDAG_07068	G2WQP8	G2XAG5	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase II subunit RPB3.	0.999
VDAG_00690	VDAG_07801	G2WQP8	G2XCB9	DNA-directed RNA polymerases I.	Metallothionein-I transcription activator.	0.999
VDAG_00690	VDAG_08162	G2WQP8	G2XDD0	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.999
VDAG_00690	VDAG_08425	G2WQP8	G2XE43	DNA-directed RNA polymerases I.	DNA-directed RNA polymerase II.	0.999