40 items (Penicillium rubens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc12g01670	Pc12g01670 protein. (259 aa)
	Pc12g06560	Pc12g06560 protein. (348 aa)
	Pc13g00460	Pc13g00460 protein. (284 aa)
	Pc13g01310	Pc13g01310 protein. (489 aa)
	Pc14g01530	Pc14g01530 protein. (449 aa)
	Pc14g01590	Pc14g01590 protein. (382 aa)
	Pc14g02210	Pc14g02210 protein. (464 aa)
	Pc16g09450	Pc16g09450 protein. (1328 aa)
	Pc16g04540	Pc16g04540 protein. (284 aa)
	Pc16g06120	Pc16g06120 protein. (1180 aa)
	Pc16g15230	Pc16g15230 protein. (535 aa)
	Pc16g15440	Pc16g15440 protein. (800 aa)
	Pc16g15490	Pc16g15490 protein. (423 aa)
	Pc17g00570	Pc17g00570 protein. (532 aa)
	Pc18g03920	Pc18g03920 protein. (489 aa)
	Pc19g00650	Pc19g00650 protein. (608 aa)
	Pc20g03470	Pc20g03470 protein. (1069 aa)
	Pc20g06420	Pc20g06420 protein. (436 aa)
	Pc20g13640	Pc20g13640 protein. (492 aa)
	Pc20g13750	Pc20g13750 protein. (924 aa)
	Pc21g10890	Pc21g10890 protein. (356 aa)
	Pc21g00090	Pc21g00090 protein. (535 aa)
	Pc22g24930	Pc22g24930 protein. (1982 aa)
	Pc22g25830	Pc22g25830 protein. (365 aa)
	Pc22g17980	Pc22g17980 protein. (411 aa)
	Pc22g26470	Pc22g26470 protein. (181 aa)
	Pc22g06280	Pc22g06280 protein. (490 aa)
	Pc23g00150	Pc23g00150 protein. (535 aa)
	Pc23g00220	Pc23g00220 protein. (180 aa)
	Pc23g00530	Pc23g00530 protein. (292 aa)
	Pc23g00580	Pc23g00580 protein. (289 aa)
	Pc24g01190	Pc24g01190 protein. (227 aa)
	Pc24g00340	Pc24g00340 protein. (535 aa)
	Pc24g01350	Pc24g01350 protein. (535 aa)
	Pc24g01810	Pc24g01810 protein. (181 aa)
	Pc24g01860	Pc24g01860 protein. (524 aa)
	Pc24g02300	Pc24g02300 protein. (535 aa)
	Pc24g02340	Pc24g02340 protein. (181 aa)
	Pc24g02640	Pc24g02640 protein. (529 aa)
	Pc24g02670	Pc24g02670 protein. (265 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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Export your current network:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pc12g01670	Pc13g00460	B6GZ40	B6H174	Pc12g01670 protein.	Pc13g00460 protein.	0.515
Pc12g01670	Pc13g01310	B6GZ40	B6H1P6	Pc12g01670 protein.	Pc13g01310 protein.	0.526
Pc12g01670	Pc14g01530	B6GZ40	B6H5Y1	Pc12g01670 protein.	Pc14g01530 protein.	0.527
Pc12g01670	Pc14g02210	B6GZ40	B6H648	Pc12g01670 protein.	Pc14g02210 protein.	0.518
Pc12g01670	Pc16g09450	B6GZ40	B6H8P5	Pc12g01670 protein.	Pc16g09450 protein.	0.451
Pc12g01670	Pc16g15230	B6GZ40	B6HA66	Pc12g01670 protein.	Pc16g15230 protein.	0.530
Pc12g01670	Pc16g15490	B6GZ40	B6HA91	Pc12g01670 protein.	Pc16g15490 protein.	0.529
Pc12g01670	Pc17g00570	B6GZ40	B6HAY4	Pc12g01670 protein.	Pc17g00570 protein.	0.527
Pc12g01670	Pc20g06420	B6GZ40	B6HGH4	Pc12g01670 protein.	Pc20g06420 protein.	0.513
Pc12g01670	Pc20g13640	B6GZ40	B6HH01	Pc12g01670 protein.	Pc20g13640 protein.	0.526
Pc12g01670	Pc20g13750	B6GZ40	B6HH12	Pc12g01670 protein.	Pc20g13750 protein.	0.492
Pc12g01670	Pc21g00090	B6GZ40	B6HN20	Pc12g01670 protein.	Pc21g00090 protein.	0.527
Pc12g01670	Pc21g10890	B6GZ40	B6HJF2	Pc12g01670 protein.	Pc21g10890 protein.	0.531
Pc12g01670	Pc22g17980	B6GZ40	B6HTQ1	Pc12g01670 protein.	Pc22g17980 protein.	0.429
Pc12g01670	Pc22g24930	B6GZ40	B6HRN3	Pc12g01670 protein.	Pc22g24930 protein.	0.485
Pc12g01670	Pc22g25830	B6GZ40	B6HSZ6	Pc12g01670 protein.	Pc22g25830 protein.	0.504
Pc12g01670	Pc22g26470	B6GZ40	B6HTV0	Pc12g01670 protein.	Pc22g26470 protein.	0.408
Pc12g01670	Pc23g00150	B6GZ40	B6HW74	Pc12g01670 protein.	Pc23g00150 protein.	0.528
Pc12g01670	Pc23g00220	B6GZ40	B6HW79	Pc12g01670 protein.	Pc23g00220 protein.	0.472
Pc12g01670	Pc23g00530	B6GZ40	B6HWA4	Pc12g01670 protein.	Pc23g00530 protein.	0.538