(43 nodes) Spliceosomal complex network (Penicillium rubens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc12g14830	Pc12g14830 protein. (383 aa)
	Pc12g14320	Pc12g14320 protein. (336 aa)
	Pc13g02550	Pc13g02550 protein. (216 aa)
	Pc13g03680	Pc13g03680 protein. (242 aa)
	Pc13g03880	Pc13g03880 protein. (448 aa)
	Pc13g05230	Pc13g05230 protein. (1124 aa)
	Pc13g09920	Pc13g09920 protein. (315 aa)
	Pc13g11900	Pc13g11900 protein. (132 aa)
	Pc13g13990	Pc13g13990 protein. (194 aa)
	Pc16g02540	Pc16g02540 protein. (200 aa)
	Pc16g02360	Pc16g02360 protein. (672 aa)
	Pc16g08210	Pc16g08210 protein. (925 aa)
	Pc16g04580	Pc16g04580 protein. (452 aa)
	Pc16g04940	Pc16g04940 protein. (671 aa)
	Pc18g04570	Pc18g04570 protein. (873 aa)
	Pc18g05750	Pc18g05750 protein. (583 aa)
	Pc20g02970	Pc20g02970 protein. (470 aa)
	Pc20g00660	Pc20g00660 protein. (148 aa)
	Pc20g12320	Pc20g12320 protein. (213 aa)
	Pc20g06520	Pc20g06520 protein. (465 aa)
	Pc21g14480	Pc21g14480 protein. (543 aa)
	Pc21g10420	Pc21g10420 protein. (1231 aa)
	Pc21g23610	Pc21g23610 protein. (366 aa)
	Pc21g23780	Pc21g23780 protein. (659 aa)
	Pc21g15360	Pc21g15360 protein. (282 aa)
	Pc21g07020	Pc21g07020 protein. (828 aa)
	Pc21g20180	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (208 aa)
	Pc21g03340	Pc21g03340 protein. (474 aa)
	Pc21g16450	Pc21g16450 protein. (579 aa)
	Pc21g04110	Pc21g04110 protein. (571 aa)
	Pc21g17950	Pc21g17950 protein. (402 aa)
	Pc21g00700	Pc21g00700 protein. (242 aa)
	Pc22g02480	Pc22g02480 protein. (302 aa)
	Pc22g11830	Pc22g11830 protein. (297 aa)
	Pc22g16450	Pc22g16450 protein. (279 aa)
	Pc22g20510	Pc22g20510 protein. (429 aa)
	Pc22g25400	Pc22g25400 protein. (856 aa)
	Pc22g08680	Pc22g08680 protein. (790 aa)
	Pc22g22070	Pc22g22070 protein. (1340 aa)
	Pc22g04920	Pc22g04920 protein. (700 aa)
	Pc22g18930	Pc22g18930 protein. (525 aa)
	Pc22g23430	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
	Pc22g15470	Pc22g15470 protein. (333 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pc12g14320	Pc12g14830	B6H0U1	B6GWX2	Pc12g14320 protein.	Pc12g14830 protein.	0.884
Pc12g14320	Pc13g02550	B6H0U1	B6H1K8	Pc12g14320 protein.	Pc13g02550 protein.	0.450
Pc12g14320	Pc13g03680	B6H0U1	B6H1Y1	Pc12g14320 protein.	Pc13g03680 protein.	0.857
Pc12g14320	Pc13g03880	B6H0U1	B6H229	Pc12g14320 protein.	Pc13g03880 protein.	0.405
Pc12g14320	Pc13g05230	B6H0U1	B6H2G1	Pc12g14320 protein.	Pc13g05230 protein.	0.943
Pc12g14320	Pc13g09920	B6H0U1	B6H4P2	Pc12g14320 protein.	Pc13g09920 protein.	0.992
Pc12g14320	Pc16g02360	B6H0U1	B6H7B9	Pc12g14320 protein.	Pc16g02360 protein.	0.475
Pc12g14320	Pc16g04580	B6H0U1	B6H8Y8	Pc12g14320 protein.	Pc16g04580 protein.	0.846
Pc12g14320	Pc16g04940	B6H0U1	B6H9A4	Pc12g14320 protein.	Pc16g04940 protein.	0.922
Pc12g14320	Pc16g08210	B6H0U1	B6H838	Pc12g14320 protein.	Pc16g08210 protein.	0.706
Pc12g14320	Pc18g05750	B6H0U1	B6HCC1	Pc12g14320 protein.	Pc18g05750 protein.	0.959
Pc12g14320	Pc20g00660	B6H0U1	B6HG13	Pc12g14320 protein.	Pc20g00660 protein.	0.944
Pc12g14320	Pc20g02970	B6H0U1	B6HF57	Pc12g14320 protein.	Pc20g02970 protein.	0.729
Pc12g14320	Pc20g06520	B6H0U1	B6HGU9	Pc12g14320 protein.	Pc20g06520 protein.	0.464
Pc12g14320	Pc20g12320	B6H0U1	B6HGJ3	Pc12g14320 protein.	Pc20g12320 protein.	0.922
Pc12g14320	Pc21g00700	B6H0U1	B6HNK1	Pc12g14320 protein.	Pc21g00700 protein.	0.862
Pc12g14320	Pc21g03340	B6H0U1	B6HL43	Pc12g14320 protein.	Pc21g03340 protein.	0.988
Pc12g14320	Pc21g04110	B6H0U1	B6HLW9	Pc12g14320 protein.	Pc21g04110 protein.	0.487
Pc12g14320	Pc21g07020	B6H0U1	B6HK26	Pc12g14320 protein.	Pc21g07020 protein.	0.901
Pc12g14320	Pc21g10420	B6H0U1	B6HII9	Pc12g14320 protein.	Pc21g10420 protein.	0.475