(14 nodes) Proteasome accessory complex network (Penicillium rubens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc12g00420	Pc12g00420 protein. (277 aa)
	Pc12g05300	Pc12g05300 protein. (352 aa)
	Pc12g09420	Pc12g09420 protein. (494 aa)
	Pc13g02690	Pc13g02690 protein; Belongs to the AAA ATPase family. (462 aa)
	Pc13g05760	Pc13g05760 protein; Belongs to the AAA ATPase family. (389 aa)
	Pc13g09660	Pc13g09660 protein; Belongs to the AAA ATPase family. (422 aa)
	Pc14g01750	Pc14g01750 protein; Belongs to the AAA ATPase family. (390 aa)
	Pc16g07550	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (1130 aa)
	Pc20g03150	Pc20g03150 protein. (489 aa)
	Pc20g06040	Pc20g06040 protein; Belongs to the AAA ATPase family. (439 aa)
	Pc20g03920	Pc20g03920 protein. (281 aa)
	Pc21g06810	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (902 aa)
	Pc22g14740	Pc22g14740 protein; Belongs to the AAA ATPase family. (464 aa)
	Pc22g23600	Ubiquitin carboxyl-terminal hydrolase. (577 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pc12g00420	Pc12g05300	B6GXI8	B6GZ60	Pc12g00420 protein.	Pc12g05300 protein.	0.999
Pc12g00420	Pc12g09420	B6GXI8	B6GZH0	Pc12g00420 protein.	Pc12g09420 protein.	0.999
Pc12g00420	Pc13g02690	B6GXI8	B6H1D6	Pc12g00420 protein.	Pc13g02690 protein; Belongs to the AAA ATPase family.	0.999
Pc12g00420	Pc13g05760	B6GXI8	B6H2X7	Pc12g00420 protein.	Pc13g05760 protein; Belongs to the AAA ATPase family.	0.999
Pc12g00420	Pc13g09660	B6GXI8	B6H450	Pc12g00420 protein.	Pc13g09660 protein; Belongs to the AAA ATPase family.	0.999
Pc12g00420	Pc14g01750	B6GXI8	B6H603	Pc12g00420 protein.	Pc14g01750 protein; Belongs to the AAA ATPase family.	0.999
Pc12g00420	Pc16g07550	B6GXI8	B6H817	Pc12g00420 protein.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
Pc12g00420	Pc20g03150	B6GXI8	B6HFP6	Pc12g00420 protein.	Pc20g03150 protein.	0.999
Pc12g00420	Pc20g03920	B6GXI8	B6HH62	Pc12g00420 protein.	Pc20g03920 protein.	0.999
Pc12g00420	Pc20g06040	B6GXI8	B6HFS5	Pc12g00420 protein.	Pc20g06040 protein; Belongs to the AAA ATPase family.	0.999
Pc12g00420	Pc21g06810	B6GXI8	B6HJP8	Pc12g00420 protein.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
Pc12g00420	Pc22g14740	B6GXI8	B6HVB1	Pc12g00420 protein.	Pc22g14740 protein; Belongs to the AAA ATPase family.	0.999
Pc12g00420	Pc22g23600	B6GXI8	B6HVU7	Pc12g00420 protein.	Ubiquitin carboxyl-terminal hydrolase.	0.998
Pc12g05300	Pc12g00420	B6GZ60	B6GXI8	Pc12g05300 protein.	Pc12g00420 protein.	0.999
Pc12g05300	Pc12g09420	B6GZ60	B6GZH0	Pc12g05300 protein.	Pc12g09420 protein.	0.999
Pc12g05300	Pc13g02690	B6GZ60	B6H1D6	Pc12g05300 protein.	Pc13g02690 protein; Belongs to the AAA ATPase family.	0.999
Pc12g05300	Pc13g05760	B6GZ60	B6H2X7	Pc12g05300 protein.	Pc13g05760 protein; Belongs to the AAA ATPase family.	0.999
Pc12g05300	Pc13g09660	B6GZ60	B6H450	Pc12g05300 protein.	Pc13g09660 protein; Belongs to the AAA ATPase family.	0.999
Pc12g05300	Pc14g01750	B6GZ60	B6H603	Pc12g05300 protein.	Pc14g01750 protein; Belongs to the AAA ATPase family.	0.999
Pc12g05300	Pc16g07550	B6GZ60	B6H817	Pc12g05300 protein.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999