(66 nodes) Mixed, incl. Small GTPase mediated signal transduction, and G protein-coupled receptor signaling pathway network (Penicillium rubens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc03g00120	Pc03g00120 protein. (751 aa)
	Pc06g01430	Pc06g01430 protein. (229 aa)
	Pc12g03830	Pc12g03830 protein. (251 aa)
	Pc12g00340	Pc12g00340 protein. (1194 aa)
	Pc12g04340	Pc12g04340 protein. (1825 aa)
	Pc12g15610	Pc12g15610 protein. (785 aa)
	Pc12g15660	Pc12g15660 protein. (311 aa)
	Pc12g05140	Pc12g05140 protein. (273 aa)
	Pc12g16420	Pc12g16420 protein. (509 aa)
	Pc13g03740	Pc13g03740 protein. (333 aa)
	Pc13g05140	Pc13g05140 protein. (244 aa)
	Pc13g14600	Pc13g14600 protein. (793 aa)
	Pc13g14520	Pc13g14520 protein. (199 aa)
	Pc13g15720	Pc13g15720 protein. (380 aa)
	Pc13g06260	Pc13g06260 protein. (599 aa)
	Pc13g08290	Pc13g08290 protein. (1048 aa)
	Pc13g10080	Pc13g10080 protein. (197 aa)
	Pc13g11670	Pc13g11670 protein. (356 aa)
	Pc13g14050	Pc13g14050 protein. (842 aa)
	Pc13g12240	Pc13g12240 protein. (353 aa)
	Pc14g01200	Pc14g01200 protein. (1421 aa)
	Pc14g01890	Pc14g01890 protein; Belongs to the protein kinase superfamily. (462 aa)
	Pc14g01930	Pc14g01930 protein. (198 aa)
	Pc15g00600	Pc15g00600 protein. (638 aa)
	Pc16g00020	Uncharacterized protein. (408 aa)
	Pc16g01150	Pc16g01150 protein. (698 aa)
	Pc16g02760	E3 ubiquitin-protein ligase. (833 aa)
	Pc16g09320	Pc16g09320 protein. (809 aa)
	Pc16g10580	Pc16g10580 protein. (275 aa)
	Pc16g08890	Pc16g08890 protein; Belongs to the DOCK family. (2127 aa)
	Pc16g10360	Pc16g10360 protein. (87 aa)
	Pc16g11320	Pc16g11320 protein. (230 aa)
	Pc18g01610	Pc18g01610 protein. (359 aa)
	Pc20g07500	Pc20g07500 protein. (630 aa)
	Pc20g07530	Pc20g07530 protein. (194 aa)
	Pc20g08070	Pc20g08070 protein. (551 aa)
	Pc20g08390	Pc20g08390 protein. (258 aa)
	Pc20g09160	Pc20g09160 protein. (579 aa)
	Pc20g02870	Pc20g02870 protein. (156 aa)
	Pc20g03060	Pc20g03060 protein. (213 aa)
	Pc20g03570	Pc20g03570 protein. (258 aa)
	Pc20g00990	Non-specific serine/threonine protein kinase. (846 aa)
	Pc21g01120	Pc21g01120 protein. (212 aa)
	Pc21g01780	Pc21g01780 protein. (1219 aa)
	Pc21g06220	Pc21g06220 protein. (198 aa)
	Pc21g07370	Pc21g07370 protein. (361 aa)
	Pc21g03030	Pc21g03030 protein. (235 aa)
	Pc21g08730	Pc21g08730 protein. (1898 aa)
	Pc21g08890	Pc21g08890 protein. (663 aa)
	Pc22g01940	Pc22g01940 protein. (280 aa)
	Pc22g01670	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (354 aa)
	Pc22g15650	Pc22g15650 protein. (469 aa)
	Pc22g11540	Pc22g11540 protein. (295 aa)
	Pc22g11730	Pc22g11730 protein. (1029 aa)
	Pc22g16480	Pc22g16480 protein. (1217 aa)
	Pc22g07850	Pc22g07850 protein; Belongs to the small GTPase superfamily. Arf family. (183 aa)
	Pc22g25090	Pc22g25090 protein. (866 aa)
	Pc22g16940	Pc22g16940 protein. (463 aa)
	Pc22g04050	Pc22g04050 protein. (1261 aa)
	Pc22g04080	Pc22g04080 protein. (384 aa)
	Pc22g17490	Pc22g17490 protein. (1115 aa)
	Pc22g21700	Pc22g21700 protein. (345 aa)
	Pc22g09010	Pc22g09010 protein. (193 aa)
	Pc22g26270	Pc22g26270 protein. (220 aa)
	Pc22g05920	Pc22g05920 protein. (921 aa)
	Pc24g02470	Pc24g02470 protein. (220 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pc03g00120	Pc13g06260	B6GVR1	B6H3E5	Pc03g00120 protein.	Pc13g06260 protein.	0.656
Pc03g00120	Pc13g08290	B6GVR1	B6H4B6	Pc03g00120 protein.	Pc13g08290 protein.	0.935
Pc03g00120	Pc13g10080	B6GVR1	B6H4Q8	Pc03g00120 protein.	Pc13g10080 protein.	0.477
Pc03g00120	Pc13g14520	B6GVR1	B6H2I8	Pc03g00120 protein.	Pc13g14520 protein.	0.477
Pc03g00120	Pc14g01930	B6GVR1	B6H621	Pc03g00120 protein.	Pc14g01930 protein.	0.478
Pc03g00120	Pc20g03060	B6GVR1	B6HFE8	Pc03g00120 protein.	Pc20g03060 protein.	0.477
Pc03g00120	Pc20g07530	B6GVR1	B6HEI5	Pc03g00120 protein.	Pc20g07530 protein.	0.697
Pc03g00120	Pc21g03030	B6GVR1	B6HKQ1	Pc03g00120 protein.	Pc21g03030 protein.	0.498
Pc03g00120	Pc21g07370	B6GVR1	B6HKG3	Pc03g00120 protein.	Pc21g07370 protein.	0.520
Pc03g00120	Pc22g05920	B6GVR1	B6HVI0	Pc03g00120 protein.	Pc22g05920 protein.	0.469
Pc03g00120	Pc22g09010	B6GVR1	B6HTI8	Pc03g00120 protein.	Pc22g09010 protein.	0.776
Pc06g01430	Pc13g06260	B6GW81	B6H3E5	Pc06g01430 protein.	Pc13g06260 protein.	0.825
Pc06g01430	Pc13g08290	B6GW81	B6H4B6	Pc06g01430 protein.	Pc13g08290 protein.	0.709
Pc06g01430	Pc13g10080	B6GW81	B6H4Q8	Pc06g01430 protein.	Pc13g10080 protein.	0.497
Pc06g01430	Pc13g14520	B6GW81	B6H2I8	Pc06g01430 protein.	Pc13g14520 protein.	0.497
Pc06g01430	Pc14g01930	B6GW81	B6H621	Pc06g01430 protein.	Pc14g01930 protein.	0.497
Pc06g01430	Pc16g02760	B6GW81	B6H7J0	Pc06g01430 protein.	E3 ubiquitin-protein ligase.	0.546
Pc06g01430	Pc20g03060	B6GW81	B6HFE8	Pc06g01430 protein.	Pc20g03060 protein.	0.497
Pc06g01430	Pc20g07500	B6GW81	B6HEI2	Pc06g01430 protein.	Pc20g07500 protein.	0.551
Pc06g01430	Pc20g07530	B6GW81	B6HEI5	Pc06g01430 protein.	Pc20g07530 protein.	0.912