20 items (Penicillium rubens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc20g05340	Pc20g05340 protein. (1257 aa)
	Pc22g10150	Pc22g10150 protein. (983 aa)
	Pc22g17030	Pc22g17030 protein. (149 aa)
	Pc22g08050	Pc22g08050 protein. (937 aa)
	Pc22g03450	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (185 aa)
	Pc22g20640	Pc22g20640 protein. (457 aa)
	Pc22g16250	Pc22g16250 protein. (358 aa)
	Pc21g17950	Pc21g17950 protein. (402 aa)
	Pc21g08660	Small nuclear ribonucleoprotein Sm D2. (123 aa)
	Pc21g12690	Pc21g12690 protein. (260 aa)
	Pc21g03000	Pc21g03000 protein. (171 aa)
	Pc21g02990	Pc21g02990 protein. (88 aa)
	Pc21g02980	Pc21g02980 protein. (159 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (121 aa)
	Pc20g10480	Small nuclear ribonucleoprotein G. (88 aa)
	Pc20g15290	Pc20g15290 protein. (286 aa)
	Pc20g01340	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (100 aa)
	Pc18g04100	Pc18g04100 protein. (2354 aa)
	Pc16g04930	Pc16g04930 protein. (519 aa)
	Pc13g07180	Pc13g07180 protein. (212 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	Pc13g07180	B6HHB6	B6H3R7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc13g07180 protein.	0.906
LSM4	Pc16g04930	B6HHB6	B6H9A3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc16g04930 protein.	0.974
LSM4	Pc18g04100	B6HHB6	B6HBH4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc18g04100 protein.	0.942
LSM4	Pc20g01340	B6HHB6	B6HD71	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.977
LSM4	Pc20g05340	B6HHB6	B6HEU4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc20g05340 protein.	0.992
LSM4	Pc20g10480	B6HHB6	B6HFU3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.966
LSM4	Pc21g02980	B6HHB6	B6HKP6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc21g02980 protein.	0.844
LSM4	Pc21g02990	B6HHB6	B6HKP7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc21g02990 protein.	0.931
LSM4	Pc21g03000	B6HHB6	B6HKP8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc21g03000 protein.	0.925
LSM4	Pc21g08660	B6HHB6	B6HMC4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.992
LSM4	Pc21g12690	B6HHB6	B6HM09	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc21g12690 protein.	0.844
LSM4	Pc22g03450	B6HHB6	B6HRD4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.851
LSM4	Pc22g08050	B6HHB6	B6HRV0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc22g08050 protein.	0.963
LSM4	Pc22g10150	B6HHB6	B6HV95	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc22g10150 protein.	0.926
Pc13g07180	LSM4	B6H3R7	B6HHB6	Pc13g07180 protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.906
Pc13g07180	Pc16g04930	B6H3R7	B6H9A3	Pc13g07180 protein.	Pc16g04930 protein.	0.837
Pc13g07180	Pc18g04100	B6H3R7	B6HBH4	Pc13g07180 protein.	Pc18g04100 protein.	0.943
Pc13g07180	Pc20g01340	B6H3R7	B6HD71	Pc13g07180 protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
Pc13g07180	Pc20g10480	B6H3R7	B6HFU3	Pc13g07180 protein.	Small nuclear ribonucleoprotein G.	0.997
Pc13g07180	Pc20g15290	B6H3R7	B6HDY5	Pc13g07180 protein.	Pc20g15290 protein.	0.676