STRINGSTRING
Pc20g05340 Pc20g05340 Pc22g10150 Pc22g10150 Pc22g17030 Pc22g17030 Pc22g08050 Pc22g08050 Pc22g03450 Pc22g03450 Pc22g20640 Pc22g20640 Pc22g16250 Pc22g16250 Pc21g17950 Pc21g17950 Pc21g08660 Pc21g08660 Pc21g12690 Pc21g12690 Pc21g03000 Pc21g03000 Pc21g02990 Pc21g02990 Pc21g02980 Pc21g02980 LSM4 LSM4 Pc20g10480 Pc20g10480 Pc20g15290 Pc20g15290 Pc20g01340 Pc20g01340 Pc18g04100 Pc18g04100 Pc16g04930 Pc16g04930 Pc13g07180 Pc13g07180
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Pc20g05340Pc20g05340 protein. (1257 aa)
Pc22g10150Pc22g10150 protein. (983 aa)
Pc22g17030Pc22g17030 protein. (149 aa)
Pc22g08050Pc22g08050 protein. (937 aa)
Pc22g03450U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (185 aa)
Pc22g20640Pc22g20640 protein. (457 aa)
Pc22g16250Pc22g16250 protein. (358 aa)
Pc21g17950Pc21g17950 protein. (402 aa)
Pc21g08660Small nuclear ribonucleoprotein Sm D2. (123 aa)
Pc21g12690Pc21g12690 protein. (260 aa)
Pc21g03000Pc21g03000 protein. (171 aa)
Pc21g02990Pc21g02990 protein. (88 aa)
Pc21g02980Pc21g02980 protein. (159 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (121 aa)
Pc20g10480Small nuclear ribonucleoprotein G. (88 aa)
Pc20g15290Pc20g15290 protein. (286 aa)
Pc20g01340Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (100 aa)
Pc18g04100Pc18g04100 protein. (2354 aa)
Pc16g04930Pc16g04930 protein. (519 aa)
Pc13g07180Pc13g07180 protein. (212 aa)
Your Current Organism:
Penicillium rubens
NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255
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