104 items (Penicillium rubens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc13g05020	Uncharacterized protein. (111 aa)
	Pc13g14880	Pc13g14880 protein. (345 aa)
	Pc13g14910	Pc13g14910 protein. (683 aa)
	Pc13g14930	Pc13g14930 protein. (614 aa)
	Pc13g13460	Pc13g13460 protein. (405 aa)
	Pc13g10310	Pc13g10310 protein. (405 aa)
	Pc13g11870	Pc13g11870 protein. (304 aa)
	Pc13g12240	Pc13g12240 protein. (353 aa)
	Pc14g01090	Pc14g01090 protein. (458 aa)
	Pc14g01520	Pc14g01520 protein. (581 aa)
	Pc14g01530	Pc14g01530 protein. (449 aa)
	Pc15g00600	Pc15g00600 protein. (638 aa)
	Pc16g00180	Pc16g00180 protein. (349 aa)
	Pc16g00190	Pc16g00190 protein. (444 aa)
	Pc16g00380	Pc16g00380 protein. (285 aa)
	Pc16g00400	Pc16g00400 protein. (537 aa)
	Pc16g07110	Pc16g07110 protein. (242 aa)
	Pc16g06910	Pc16g06910 protein. (592 aa)
	Pc16g06930	Pc16g06930 protein. (628 aa)
	Pc16g03670	Pc16g03670 protein; Belongs to the PAL/histidase family. (705 aa)
	Pc16g06970	Pc16g06970 protein. (57 aa)
	Pc16g09450	Pc16g09450 protein. (1328 aa)
	Pc16g02920	Uncharacterized protein. (336 aa)
	Pc16g04510	Pc16g04510 protein. (581 aa)
	Pc16g06120	Pc16g06120 protein. (1180 aa)
	Pc16g04910	Pc16g04910 protein. (553 aa)
	Pc16g11620	Pc16g11620 protein; Belongs to the cytochrome P450 family. (486 aa)
	Pc16g11830	Pc16g11830 protein. (365 aa)
	Pc16g12030	Pc16g12030 protein; Belongs to the cytochrome P450 family. (490 aa)
	Pc16g15230	Pc16g15230 protein. (535 aa)
	Pc16g15440	Pc16g15440 protein. (800 aa)
	Pc16g15490	Pc16g15490 protein. (423 aa)
	Pc16g13820	Pc16g13820 protein. (184 aa)
	Pc17g00200	Pc17g00200 protein. (529 aa)
	Pc17g00570	Pc17g00570 protein. (532 aa)
	Pc17g01140	Pc17g01140 protein. (453 aa)
	Pc18g03140	Pc18g03140 protein. (388 aa)
	Pc18g03920	Pc18g03920 protein. (489 aa)
	Pc18g06470	Uncharacterized protein. (240 aa)
	Pc19g00650	Pc19g00650 protein. (608 aa)
	Pc20g15170	Pc20g15170 protein. (256 aa)
	Pc20g15280	Pc20g15280 protein. (582 aa)
	Pc20g02390	Pc20g02390 protein. (484 aa)
	Pc20g02420	Pc20g02420 protein. (411 aa)
	Pc20g09660	Pc20g09660 protein. (428 aa)
	Pc20g05940	Pc20g05940 protein; Belongs to the cytochrome P450 family. (534 aa)
	Pc20g06420	Pc20g06420 protein. (436 aa)
	Pc20g13510	Citrate synthase; Belongs to the citrate synthase family. (465 aa)
	Pc20g13640	Pc20g13640 protein. (492 aa)
	Pc21g23520	Pc21g23520 protein. (961 aa)
	Pc21g06530	Pc21g06530 protein. (1130 aa)
	Pc21g02350	Pc21g02350 protein. (550 aa)
	Pc21g19780	Uncharacterized protein. (191 aa)
	Pc21g07320	Pc21g07320 protein. (537 aa)
	Pc21g03780	Pc21g03780 protein. (295 aa)
	Pc21g21270	Pc21g21270 protein. (277 aa)
	Pc21g17230	Pc21g17230 protein. (594 aa)
	Pc21g08920	Pc21g08920 protein. (382 aa)
	Pc21g17800	Pc21g17800 protein. (384 aa)
	Pc21g00090	Pc21g00090 protein. (535 aa)
	Pc21g09380	Pc21g09380 protein. (384 aa)
	Pc21g13890	Pc21g13890 protein. (424 aa)
	Pc22g08110	Pc22g08110 protein. (524 aa)
	Pc22g16830	Pc22g16830 protein. (516 aa)
	Pc22g08150	Pc22g08150 protein. (551 aa)
	Pc22g08160	Pc22g08160 protein. (325 aa)
	Pc22g08170	Pc22g08170 protein. (1776 aa)
	Pc22g08250	Pc22g08250 protein. (590 aa)
	Pc22g25830	Pc22g25830 protein. (365 aa)
	Pc22g26470	Pc22g26470 protein. (181 aa)
	Pc22g14040	Pc22g14040 protein. (600 aa)
	Pc22g05290	Pc22g05290 protein. (284 aa)
	Pc22g22790	Pc22g22790 protein. (538 aa)
	Pc22g05640	Pc22g05640 protein. (443 aa)
	Pc22g19250	Pc22g19250 protein. (462 aa)
	Pc22g19340	Pc22g19340 protein. (345 aa)
	Pc22g23540	Pc22g23540 protein. (387 aa)
	Pc22g06350	Pc22g06350 protein. (1167 aa)
	Pc22g15400	Pc22g15400 protein. (436 aa)
	Pc22g19550	Pc22g19550 protein. (1632 aa)
	Pc23g00150	Pc23g00150 protein. (535 aa)
	Pc23g00590	Pc23g00590 protein. (373 aa)
	Pc24g00340	Pc24g00340 protein. (535 aa)
	Pc24g00400	Pc24g00400 protein. (273 aa)
	Pc12g14850	Pc12g14850 protein. (678 aa)
	Pc12g08380	Pc12g08380 protein. (355 aa)
	Pc12g08390	Pc12g08390 protein. (665 aa)
	Pc12g08520	Pc12g08520 protein. (417 aa)
	Pc12g16460	Pc12g16460 protein. (248 aa)
	Pc12g13870	Pc12g13870 protein. (293 aa)
	Pc13g02030	Pc13g02030 protein. (562 aa)
	Pc13g01140	Uncharacterized protein. (106 aa)
	Pc13g01310	Pc13g01310 protein. (489 aa)
	Pc13g04050	Pc13g04050 protein. (422 aa)
	Pc13g04520	Pc13g04520 protein. (416 aa)
	Pc24g01350	Pc24g01350 protein. (535 aa)
	Pc24g01860	Pc24g01860 protein. (524 aa)
	Pc24g02300	Pc24g02300 protein. (535 aa)
	Pc24g02530	Pc24g02530 protein. (535 aa)
	Pc24g02640	Pc24g02640 protein. (529 aa)
	Pc06g00020	Pc06g00020 protein. (363 aa)
	Pc06g00300	Pc06g00300 protein. (413 aa)
	Pc06g01170	Pc06g01170 protein. (581 aa)
	Pc12g00190	Pc12g00190 protein. (1369 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pc12g16460	Pc22g19340	B6GZ16	B6HVR7	Pc12g16460 protein.	Pc22g19340 protein.	0.529
Pc13g01310	Pc14g01530	B6H1P6	B6H5Y1	Pc13g01310 protein.	Pc14g01530 protein.	0.542
Pc13g01310	Pc17g00200	B6H1P6	B6HAV2	Pc13g01310 protein.	Pc17g00200 protein.	0.540
Pc13g01310	Pc22g26470	B6H1P6	B6HTV0	Pc13g01310 protein.	Pc22g26470 protein.	0.407
Pc13g01310	Pc24g02640	B6H1P6	B6HX38	Pc13g01310 protein.	Pc24g02640 protein.	0.540
Pc13g04050	Pc22g08170	B6H267	B6HS84	Pc13g04050 protein.	Pc22g08170 protein.	0.464
Pc13g12240	Pc15g00600	B6H598	B6H6K6	Pc13g12240 protein.	Pc15g00600 protein.	0.984
Pc13g12240	Pc20g02420	B6H598	B6HEE4	Pc13g12240 protein.	Pc20g02420 protein.	0.649
Pc14g01530	Pc13g01310	B6H5Y1	B6H1P6	Pc14g01530 protein.	Pc13g01310 protein.	0.542
Pc14g01530	Pc16g15230	B6H5Y1	B6HA66	Pc14g01530 protein.	Pc16g15230 protein.	0.542
Pc14g01530	Pc16g15490	B6H5Y1	B6HA91	Pc14g01530 protein.	Pc16g15490 protein.	0.540
Pc14g01530	Pc17g00570	B6H5Y1	B6HAY4	Pc14g01530 protein.	Pc17g00570 protein.	0.542
Pc14g01530	Pc17g01140	B6H5Y1	B6HB33	Pc14g01530 protein.	Pc17g01140 protein.	0.541
Pc14g01530	Pc20g06420	B6H5Y1	B6HGH4	Pc14g01530 protein.	Pc20g06420 protein.	0.535
Pc14g01530	Pc21g00090	B6H5Y1	B6HN20	Pc14g01530 protein.	Pc21g00090 protein.	0.542
Pc14g01530	Pc22g25830	B6H5Y1	B6HSZ6	Pc14g01530 protein.	Pc22g25830 protein.	0.526
Pc14g01530	Pc22g26470	B6H5Y1	B6HTV0	Pc14g01530 protein.	Pc22g26470 protein.	0.400
Pc14g01530	Pc23g00150	B6H5Y1	B6HW74	Pc14g01530 protein.	Pc23g00150 protein.	0.540
Pc14g01530	Pc24g00340	B6H5Y1	B6HWJ6	Pc14g01530 protein.	Pc24g00340 protein.	0.540
Pc14g01530	Pc24g01350	B6H5Y1	B6HWS6	Pc14g01530 protein.	Pc24g01350 protein.	0.542