5 items (Penicillium rubens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc12g03330	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family. (276 aa)
	Pc13g02980	Pc13g02980 protein. (345 aa)
	Pc13g08790	Pc13g08790 protein. (120 aa)
	Pc21g16890	Pc21g16890 protein. (950 aa)
	Pc22g20590	ER membrane protein complex subunit 4; Belongs to the EMC4 family. (186 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pc12g03330	Pc13g02980	B6H0W2	B6H202	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	Pc13g02980 protein.	0.577
Pc12g03330	Pc13g08790	B6H0W2	B6H4G6	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	Pc13g08790 protein.	0.908
Pc12g03330	Pc21g16890	B6H0W2	B6HLR5	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	Pc21g16890 protein.	0.993
Pc12g03330	Pc22g20590	B6H0W2	B6HR68	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.995
Pc13g02980	Pc12g03330	B6H202	B6H0W2	Pc13g02980 protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.577
Pc13g02980	Pc21g16890	B6H202	B6HLR5	Pc13g02980 protein.	Pc21g16890 protein.	0.430
Pc13g08790	Pc12g03330	B6H4G6	B6H0W2	Pc13g08790 protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.908
Pc13g08790	Pc21g16890	B6H4G6	B6HLR5	Pc13g08790 protein.	Pc21g16890 protein.	0.916
Pc13g08790	Pc22g20590	B6H4G6	B6HR68	Pc13g08790 protein.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.875
Pc21g16890	Pc12g03330	B6HLR5	B6H0W2	Pc21g16890 protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.993
Pc21g16890	Pc13g02980	B6HLR5	B6H202	Pc21g16890 protein.	Pc13g02980 protein.	0.430
Pc21g16890	Pc13g08790	B6HLR5	B6H4G6	Pc21g16890 protein.	Pc13g08790 protein.	0.916
Pc21g16890	Pc22g20590	B6HLR5	B6HR68	Pc21g16890 protein.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.993
Pc22g20590	Pc12g03330	B6HR68	B6H0W2	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.995
Pc22g20590	Pc13g08790	B6HR68	B6H4G6	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	Pc13g08790 protein.	0.875
Pc22g20590	Pc21g16890	B6HR68	B6HLR5	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	Pc21g16890 protein.	0.993