22 items (Penicillium rubens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc22g00500	Pc22g00500 protein; Belongs to the ubiquitin-conjugating enzyme family. (167 aa)
	Pc22g00510	Pc22g00510 protein. (367 aa)
	Pc12g08100	Pc12g08100 protein; Belongs to the ubiquitin-conjugating enzyme family. (185 aa)
	Pc12g00320	Pc12g00320 protein. (455 aa)
	Pc18g01180	Pc18g01180 protein. (152 aa)
	Pc06g01590	Uncharacterized protein. (576 aa)
	Pc20g07930	Pc20g07930 protein; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	Pc22g23780	Pc22g23780 protein; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
	Pc23g00680	Pc23g00680 protein. (434 aa)
	Pc22g14080	Pc22g14080 protein; Belongs to the ubiquitin-conjugating enzyme family. (167 aa)
	Pc22g14750	Pc22g14750 protein; Belongs to the ubiquitin-conjugating enzyme family. (236 aa)
	Pc13g05810	Pc13g05810 protein. (276 aa)
	Pc21g01440	Pc21g01440 protein. (315 aa)
	Pc21g17000	Pc21g17000 protein. (231 aa)
	Pc22g02340	Pc22g02340 protein; Belongs to the ubiquitin-conjugating enzyme family. (180 aa)
	Pc13g08770	Pc13g08770 protein. (443 aa)
	Pc13g13850	Pc13g13850 protein. (965 aa)
	Pc12g12130	Pc12g12130 protein. (153 aa)
	Pc20g07760	Pc20g07760 protein. (1126 aa)
	Pc15g00970	Ubiquitin conjugating enzyme Pex4-Penicillium chrysogenum. (164 aa)
	Pc06g01580	Pc06g01580 protein. (331 aa)
	Pc22g00410	Pc22g00410 protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pc06g01580	Pc06g01590	B6GWC8	B6GWC9	Pc06g01580 protein.	Uncharacterized protein.	0.429
Pc06g01580	Pc12g08100	B6GWC8	B6GXP0	Pc06g01580 protein.	Pc12g08100 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.447
Pc06g01590	Pc06g01580	B6GWC9	B6GWC8	Uncharacterized protein.	Pc06g01580 protein.	0.429
Pc12g00320	Pc12g08100	B6GXA4	B6GXP0	Pc12g00320 protein.	Pc12g08100 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.802
Pc12g00320	Pc12g12130	B6GXA4	B6GYB8	Pc12g00320 protein.	Pc12g12130 protein.	0.716
Pc12g00320	Pc13g05810	B6GXA4	B6H2Y2	Pc12g00320 protein.	Pc13g05810 protein.	0.806
Pc12g00320	Pc13g08770	B6GXA4	B6H4G4	Pc12g00320 protein.	Pc13g08770 protein.	0.709
Pc12g00320	Pc13g13850	B6GXA4	B6H553	Pc12g00320 protein.	Pc13g13850 protein.	0.632
Pc12g00320	Pc15g00970	B6GXA4	B6H6P1	Pc12g00320 protein.	Ubiquitin conjugating enzyme Pex4-Penicillium chrysogenum.	0.417
Pc12g00320	Pc18g01180	B6GXA4	B6HC90	Pc12g00320 protein.	Pc18g01180 protein.	0.470
Pc12g00320	Pc20g07760	B6GXA4	B6HEK8	Pc12g00320 protein.	Pc20g07760 protein.	0.773
Pc12g00320	Pc20g07930	B6GXA4	B6HEM5	Pc12g00320 protein.	Pc20g07930 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.417
Pc12g00320	Pc21g01440	B6GXA4	B6HID6	Pc12g00320 protein.	Pc21g01440 protein.	0.815
Pc12g00320	Pc21g17000	B6GXA4	B6HM32	Pc12g00320 protein.	Pc21g17000 protein.	0.686
Pc12g00320	Pc22g00410	B6GXA4	B6HPF5	Pc12g00320 protein.	Pc22g00410 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.693
Pc12g00320	Pc22g00500	B6GXA4	B6HPG4	Pc12g00320 protein.	Pc22g00500 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.506
Pc12g00320	Pc22g00510	B6GXA4	B6HPG5	Pc12g00320 protein.	Pc22g00510 protein.	0.506
Pc12g00320	Pc22g02340	B6GXA4	B6HPA0	Pc12g00320 protein.	Pc22g02340 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.679
Pc12g00320	Pc22g14080	B6GXA4	B6HU38	Pc12g00320 protein.	Pc22g14080 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.650
Pc12g00320	Pc22g14750	B6GXA4	B6HVB2	Pc12g00320 protein.	Pc22g14750 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.649