40 items (Penicillium rubens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc22g11050	Pc22g11050 protein. (580 aa)
	Pc22g23430	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
	Pc22g10150	Pc22g10150 protein. (983 aa)
	Pc22g22450	Pc22g22450 protein. (627 aa)
	Pc22g04980	Pc22g04980 protein. (234 aa)
	Pc12g14830	Pc12g14830 protein. (383 aa)
	Pc12g07450	Pc12g07450 protein. (152 aa)
	Pc12g00570	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
	Pc12g12160	Pc12g12160 protein. (1208 aa)
	Pc12g03100	Pc12g03100 protein. (375 aa)
	Pc13g02550	Pc13g02550 protein. (216 aa)
	Pc13g03680	Pc13g03680 protein. (242 aa)
	Pc13g07180	Pc13g07180 protein. (212 aa)
	Pc16g08210	Pc16g08210 protein. (925 aa)
	Pc16g08470	Pc16g08470 protein. (268 aa)
	Pc16g04580	Pc16g04580 protein. (452 aa)
	Pc16g04940	Pc16g04940 protein. (671 aa)
	Pc16g12840	Pc16g12840 protein. (125 aa)
	Pc18g04100	Pc18g04100 protein. (2354 aa)
	Pc18g04140	Pc18g04140 protein. (554 aa)
	Pc18g05750	Pc18g05750 protein. (583 aa)
	Pc20g07660	Pc20g07660 protein. (519 aa)
	Pc20g10480	Small nuclear ribonucleoprotein G. (88 aa)
	Pc20g00910	Pc20g00910 protein. (494 aa)
	Pc21g14480	Pc21g14480 protein. (543 aa)
	Pc21g15360	Pc21g15360 protein. (282 aa)
	Pc21g19490	Pc21g19490 protein. (387 aa)
	Pc21g07020	Pc21g07020 protein. (828 aa)
	Pc21g20180	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (208 aa)
	Pc21g02990	Pc21g02990 protein. (88 aa)
	Pc21g11820	Pc21g11820 protein. (370 aa)
	Pc21g16360	Pc21g16360 protein. (329 aa)
	Pc21g12690	Pc21g12690 protein. (260 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	Pc21g08660	Small nuclear ribonucleoprotein Sm D2. (123 aa)
	Pc21g17950	Pc21g17950 protein. (402 aa)
	Pc22g11830	Pc22g11830 protein. (297 aa)
	Pc22g08050	Pc22g08050 protein. (937 aa)
	Pc22g25400	Pc22g25400 protein. (856 aa)
	Pc22g08360	Pc22g08360 protein. (113 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	Pc12g00570	B6HMA0	B6GXU1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
LSM3	Pc12g03100	B6HMA0	B6H0L9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc12g03100 protein.	0.977
LSM3	Pc12g12160	B6HMA0	B6GYC1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc12g12160 protein.	0.846
LSM3	Pc12g14830	B6HMA0	B6GWX2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc12g14830 protein.	0.442
LSM3	Pc13g03680	B6HMA0	B6H1Y1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc13g03680 protein.	0.619
LSM3	Pc13g07180	B6HMA0	B6H3R7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc13g07180 protein.	0.903
LSM3	Pc16g04940	B6HMA0	B6H9A4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc16g04940 protein.	0.958
LSM3	Pc16g12840	B6HMA0	B6HAH5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc16g12840 protein.	0.999
LSM3	Pc18g04100	B6HMA0	B6HBH4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc18g04100 protein.	0.989
LSM3	Pc20g07660	B6HMA0	B6HEJ8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc20g07660 protein.	0.916
LSM3	Pc20g10480	B6HMA0	B6HFU3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.978
LSM3	Pc21g02990	B6HMA0	B6HKP7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc21g02990 protein.	0.940
LSM3	Pc21g07020	B6HMA0	B6HK26	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc21g07020 protein.	0.417
LSM3	Pc21g08660	B6HMA0	B6HMC4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.994
LSM3	Pc21g11820	B6HMA0	B6HKV3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc21g11820 protein.	0.540
LSM3	Pc21g12690	B6HMA0	B6HM09	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc21g12690 protein.	0.875
LSM3	Pc22g04980	B6HMA0	B6HTY1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc22g04980 protein.	0.857
LSM3	Pc22g08050	B6HMA0	B6HRV0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc22g08050 protein.	0.958
LSM3	Pc22g08360	B6HMA0	B6HSA1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc22g08360 protein.	0.692
LSM3	Pc22g10150	B6HMA0	B6HV95	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc22g10150 protein.	0.988