7 items (Penicillium rubens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc20g08970	Pc20g08970 protein. (329 aa)
	Pc22g20590	ER membrane protein complex subunit 4; Belongs to the EMC4 family. (186 aa)
	Pc22g11220	Pc22g11220 protein. (259 aa)
	Pc21g16890	Pc21g16890 protein. (950 aa)
	Pc16g09990	Pc16g09990 protein. (153 aa)
	Pc13g08790	Pc13g08790 protein. (120 aa)
	Pc12g03330	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family. (276 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pc12g03330	Pc13g08790	B6H0W2	B6H4G6	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	Pc13g08790 protein.	0.908
Pc12g03330	Pc16g09990	B6H0W2	B6H968	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	Pc16g09990 protein.	0.990
Pc12g03330	Pc20g08970	B6H0W2	B6HF00	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	Pc20g08970 protein.	0.995
Pc12g03330	Pc21g16890	B6H0W2	B6HLR5	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	Pc21g16890 protein.	0.993
Pc12g03330	Pc22g11220	B6H0W2	B6HPX8	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	Pc22g11220 protein.	0.967
Pc12g03330	Pc22g20590	B6H0W2	B6HR68	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.995
Pc13g08790	Pc12g03330	B6H4G6	B6H0W2	Pc13g08790 protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.908
Pc13g08790	Pc16g09990	B6H4G6	B6H968	Pc13g08790 protein.	Pc16g09990 protein.	0.929
Pc13g08790	Pc20g08970	B6H4G6	B6HF00	Pc13g08790 protein.	Pc20g08970 protein.	0.909
Pc13g08790	Pc21g16890	B6H4G6	B6HLR5	Pc13g08790 protein.	Pc21g16890 protein.	0.916
Pc13g08790	Pc22g20590	B6H4G6	B6HR68	Pc13g08790 protein.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.875
Pc16g09990	Pc12g03330	B6H968	B6H0W2	Pc16g09990 protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.990
Pc16g09990	Pc13g08790	B6H968	B6H4G6	Pc16g09990 protein.	Pc13g08790 protein.	0.929
Pc16g09990	Pc20g08970	B6H968	B6HF00	Pc16g09990 protein.	Pc20g08970 protein.	0.995
Pc16g09990	Pc21g16890	B6H968	B6HLR5	Pc16g09990 protein.	Pc21g16890 protein.	0.979
Pc16g09990	Pc22g11220	B6H968	B6HPX8	Pc16g09990 protein.	Pc22g11220 protein.	0.931
Pc16g09990	Pc22g20590	B6H968	B6HR68	Pc16g09990 protein.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.980
Pc20g08970	Pc12g03330	B6HF00	B6H0W2	Pc20g08970 protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.995
Pc20g08970	Pc13g08790	B6HF00	B6H4G6	Pc20g08970 protein.	Pc13g08790 protein.	0.909
Pc20g08970	Pc16g09990	B6HF00	B6H968	Pc20g08970 protein.	Pc16g09990 protein.	0.995