36 items (Penicillium rubens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc18g04100	Pc18g04100 protein. (2354 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	Pc16g04930	Pc16g04930 protein. (519 aa)
	Pc14g00870	Pc14g00870 protein. (134 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	Pc13g10450	Pc13g10450 protein. (781 aa)
	Pc13g07180	Pc13g07180 protein. (212 aa)
	Pc13g13480	Pc13g13480 protein. (405 aa)
	Pc12g03100	Pc12g03100 protein. (375 aa)
	Pc12g04780	Pc12g04780 protein. (366 aa)
	Pc12g00570	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
	Pc21g11820	Pc21g11820 protein. (370 aa)
	Pc18g01760	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
	Pc18g02030	Splicing factor subunit; Belongs to the SF3B5 family. (83 aa)
	Pc20g01340	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (100 aa)
	Pc20g09280	Pc20g09280 protein. (521 aa)
	Pc20g09410	Pc20g09410 protein. (2205 aa)
	Pc20g10480	Small nuclear ribonucleoprotein G. (88 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (121 aa)
	Pc21g23610	Pc21g23610 protein. (366 aa)
	Pc22g18900	Pc22g18900 protein. (609 aa)
	Pc22g21820	Pc22g21820 protein. (441 aa)
	Pc22g13140	Pc22g13140 protein. (670 aa)
	Pc22g08360	Pc22g08360 protein. (113 aa)
	Pc22g08050	Pc22g08050 protein. (937 aa)
	Pc22g20640	Pc22g20640 protein. (457 aa)
	Pc22g19720	Pc22g19720 protein. (757 aa)
	Pc22g11050	Pc22g11050 protein. (580 aa)
	Pc21g19500	Pc21g19500 protein. (108 aa)
	Pc21g11050	Pc21g11050 protein. (247 aa)
	Pc21g07040	Pc21g07040 protein. (249 aa)
	Pc18g03460	Pc18g03460 protein; Belongs to the DEAD box helicase family. (790 aa)
	Pc22g01070	Pc22g01070 protein. (1209 aa)
	Pc16g12840	Pc16g12840 protein. (125 aa)
	Pc16g12600	Pc16g12600 protein. (214 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	B6HMA0	B6HHB6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	B6HMA0	B6HMB9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	B6HMA0	B6H3Y0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	Pc12g00570	B6HMA0	B6GXU1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
LSM3	Pc12g03100	B6HMA0	B6H0L9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc12g03100 protein.	0.977
LSM3	Pc12g04780	B6HMA0	B6GYJ0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc12g04780 protein.	0.838
LSM3	Pc13g07180	B6HMA0	B6H3R7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc13g07180 protein.	0.903
LSM3	Pc14g00870	B6HMA0	B6H5R5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc14g00870 protein.	0.999
LSM3	Pc16g04930	B6HMA0	B6H9A3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc16g04930 protein.	0.992
LSM3	Pc16g12600	B6HMA0	B6HAF1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc16g12600 protein.	0.947
LSM3	Pc16g12840	B6HMA0	B6HAH5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc16g12840 protein.	0.999
LSM3	Pc18g01760	B6HMA0	B6HCJ7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.957
LSM3	Pc18g02030	B6HMA0	B6HCP8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor subunit; Belongs to the SF3B5 family.	0.899
LSM3	Pc18g03460	B6HMA0	B6HBB2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc18g03460 protein; Belongs to the DEAD box helicase family.	0.594
LSM3	Pc18g04100	B6HMA0	B6HBH4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc18g04100 protein.	0.989
LSM3	Pc20g01340	B6HMA0	B6HD71	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.994
LSM3	Pc20g09280	B6HMA0	B6HF87	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc20g09280 protein.	0.988
LSM3	Pc20g09410	B6HMA0	B6HFA0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc20g09410 protein.	0.988
LSM3	Pc20g10480	B6HMA0	B6HFU3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.978
LSM3	Pc21g07040	B6HMA0	B6HK28	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pc21g07040 protein.	0.802