74 items (Penicillium rubens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc12g16560	Pc12g16560 protein. (385 aa)
	Pc24g02670	Pc24g02670 protein. (265 aa)
	Pc24g02530	Pc24g02530 protein. (535 aa)
	Pc24g02300	Pc24g02300 protein. (535 aa)
	Pc24g01860	Pc24g01860 protein. (524 aa)
	Pc24g01790	Uncharacterized protein. (606 aa)
	Pc24g01540	F-box domain-containing protein. (252 aa)
	Pc24g01350	Pc24g01350 protein. (535 aa)
	Pc24g00340	Pc24g00340 protein. (535 aa)
	Pc23g00970	Pc23g00970 protein. (659 aa)
	Pc23g00240	Pc23g00240 protein. (1013 aa)
	Pc23g00150	Pc23g00150 protein. (535 aa)
	Pc22g05900	Pc22g05900 protein. (819 aa)
	Pc22g18790	F-box domain-containing protein. (283 aa)
	Pc22g22220	Pc22g22220 protein. (868 aa)
	Pc22g22170	Pc22g22170 protein. (556 aa)
	Pc22g22160	F-box domain-containing protein. (748 aa)
	Pc22g17980	Pc22g17980 protein. (411 aa)
	Pc22g21200	Pc22g21200 protein. (639 aa)
	Pc22g23930	Pc22g23930 protein. (487 aa)
	Pc22g19700	Pc22g19700 protein. (442 aa)
	Pc22g02320	Pc22g02320 protein. (653 aa)
	Pc22g02090	Pc22g02090 protein. (1079 aa)
	Pc21g09580	Pc21g09580 protein. (443 aa)
	Pc21g04780	F-box domain-containing protein. (269 aa)
	Pc21g22020	Pc21g22020 protein. (1123 aa)
	Pc21g16880	Pc21g16880 protein. (336 aa)
	Pc21g12240	Pc21g12240 protein. (582 aa)
	Pc21g02340	Pc21g02340 protein. (566 aa)
	Pc21g06480	F-box domain-containing protein. (441 aa)
	Pc21g10450	Pc21g10450 protein. (586 aa)
	Pc21g06010	Pc21g06010 protein. (344 aa)
	Pc20g14360	Pc20g14360 protein. (665 aa)
	Pc20g06750	Pc20g06750 protein. (490 aa)
	Pc20g08640	Pc20g08640 protein. (585 aa)
	Pc19g00730	Pc19g00730 protein. (200 aa)
	Pc19g00590	F-box domain-containing protein. (456 aa)
	Pc18g05940	Pc18g05940 protein. (444 aa)
	Pc18g00540	Pc18g00540 protein. (702 aa)
	Pc18g04290	Pc18g04290 protein. (924 aa)
	Pc17g01230	Pc17g01230 protein. (204 aa)
	Pc17g01140	Pc17g01140 protein. (453 aa)
	Pc17g00570	Pc17g00570 protein. (532 aa)
	Pc16g13540	Pc16g13540 protein. (567 aa)
	Pc16g12590	Pc16g12590 protein. (183 aa)
	Pc16g15490	Pc16g15490 protein. (423 aa)
	Pc16g15230	Pc16g15230 protein. (535 aa)
	Pc16g14910	F-box domain-containing protein. (325 aa)
	Pc16g14870	Pc16g14870 protein. (517 aa)
	Pc16g10950	Pc16g10950 protein. (536 aa)
	Pc16g08860	Pc16g08860 protein. (605 aa)
	Pc16g07920	Pc16g07920 protein. (342 aa)
	Pc15g00400	Pc15g00400 protein. (447 aa)
	Pc15g00130	Pc15g00130 protein. (339 aa)
	Pc14g02210	Pc14g02210 protein. (464 aa)
	Pc14g01590	Pc14g01590 protein. (382 aa)
	Pc13g00030	Pc13g00030 protein. (653 aa)
	Pc13g06660	Pc13g06660 protein. (521 aa)
	Pc13g13070	Pc13g13070 protein. (444 aa)
	Pc13g15620	Pc13g15620 protein. (632 aa)
	Pc13g14990	Pc13g14990 protein. (412 aa)
	Pc13g05210	Pc13g05210 protein. (361 aa)
	Pc13g04280	F-box domain-containing protein. (509 aa)
	Pc13g03950	Pc13g03950 protein. (611 aa)
	Pc13g03240	Pc13g03240 protein. (499 aa)
	Pc13g01450	Pc13g01450 protein. (737 aa)
	Pc13g01900	Pc13g01900 protein. (587 aa)
	Pc13g00910	Pc13g00910 protein. (362 aa)
	Pc13g00390	Pc13g00390 protein. (653 aa)
	Pc12g06550	Pc12g06550 protein. (455 aa)
	Pc12g09710	Pc12g09710 protein. (618 aa)
	Pc12g05770	Pc12g05770 protein. (218 aa)
	sconB	Probable E3 ubiquitin ligase complex SCF subunit sconB; Component of the SCF(sconB) E3 ubiquitin ligase complex involved in the regulation of sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor. (673 aa)
	Pc12g05200	Pc12g05200 protein. (541 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pc12g05200	Pc13g01450	B6GYV4	B6H1R0	Pc12g05200 protein.	Pc13g01450 protein.	0.437
Pc12g05200	Pc16g10950	B6GYV4	B6H9J8	Pc12g05200 protein.	Pc16g10950 protein.	0.454
Pc13g01450	Pc12g05200	B6H1R0	B6GYV4	Pc13g01450 protein.	Pc12g05200 protein.	0.437
Pc13g01900	sconB	B6H1B0	B6GZA1	Pc13g01900 protein.	Probable E3 ubiquitin ligase complex SCF subunit sconB; Component of the SCF(sconB) E3 ubiquitin ligase complex involved in the regulation of sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.	0.584
Pc14g01590	Pc14g02210	B6H5Y7	B6H648	Pc14g01590 protein.	Pc14g02210 protein.	0.544
Pc14g01590	Pc16g15230	B6H5Y7	B6HA66	Pc14g01590 protein.	Pc16g15230 protein.	0.552
Pc14g01590	Pc16g15490	B6H5Y7	B6HA91	Pc14g01590 protein.	Pc16g15490 protein.	0.550
Pc14g01590	Pc17g00570	B6H5Y7	B6HAY4	Pc14g01590 protein.	Pc17g00570 protein.	0.552
Pc14g01590	Pc17g01140	B6H5Y7	B6HB33	Pc14g01590 protein.	Pc17g01140 protein.	0.551
Pc14g01590	Pc23g00150	B6H5Y7	B6HW74	Pc14g01590 protein.	Pc23g00150 protein.	0.549
Pc14g01590	Pc24g00340	B6H5Y7	B6HWJ6	Pc14g01590 protein.	Pc24g00340 protein.	0.548
Pc14g01590	Pc24g01350	B6H5Y7	B6HWS6	Pc14g01590 protein.	Pc24g01350 protein.	0.552
Pc14g01590	Pc24g01860	B6H5Y7	B6HWX5	Pc14g01590 protein.	Pc24g01860 protein.	0.546
Pc14g01590	Pc24g02300	B6H5Y7	B6HX09	Pc14g01590 protein.	Pc24g02300 protein.	0.551
Pc14g01590	Pc24g02530	B6H5Y7	B6HX29	Pc14g01590 protein.	Pc24g02530 protein.	0.551
Pc14g02210	Pc14g01590	B6H648	B6H5Y7	Pc14g02210 protein.	Pc14g01590 protein.	0.544
Pc14g02210	Pc24g02670	B6H648	B6HX40	Pc14g02210 protein.	Pc24g02670 protein.	0.529
Pc16g10950	Pc12g05200	B6H9J8	B6GYV4	Pc16g10950 protein.	Pc12g05200 protein.	0.454
Pc16g15230	Pc14g01590	B6HA66	B6H5Y7	Pc16g15230 protein.	Pc14g01590 protein.	0.552
Pc16g15230	Pc22g17980	B6HA66	B6HTQ1	Pc16g15230 protein.	Pc22g17980 protein.	0.493