35 items (Penicillium rubens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pc21g02990	Pc21g02990 protein. (88 aa)
	Pc21g02980	Pc21g02980 protein. (159 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (504 aa)
	Pc21g14600	Pc21g14600 protein. (278 aa)
	Pc21g14530	Pc21g14530 protein. (596 aa)
	Pc20g14040	Pc20g14040 protein. (390 aa)
	Pc20g06520	Pc20g06520 protein. (465 aa)
	Pc20g10480	Small nuclear ribonucleoprotein G. (88 aa)
	Pc20g02970	Pc20g02970 protein. (470 aa)
	Pc20g01340	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (100 aa)
	Pc18g05750	Pc18g05750 protein. (583 aa)
	Pc16g11900	Pc16g11900 protein. (209 aa)
	Pc16g10490	Pc16g10490 protein. (292 aa)
	Pc16g08210	Pc16g08210 protein. (925 aa)
	Pc16g02770	Pc16g02770 protein. (191 aa)
	Pc13g13950	Pc13g13950 protein. (102 aa)
	Pc13g09250	Pc13g09250 protein. (1026 aa)
	Pc13g09050	Pc13g09050 protein. (350 aa)
	Pc13g10700	Pc13g10700 protein. (301 aa)
	Pc22g18930	Pc22g18930 protein. (525 aa)
	Pc21g20550	Pc21g20550 protein. (331 aa)
	Pc21g12340	Pc21g12340 protein. (718 aa)
	Pc21g12690	Pc21g12690 protein. (260 aa)
	Pc13g07180	Pc13g07180 protein. (212 aa)
	Pc13g06570	Pc13g06570 protein. (706 aa)
	Pc13g05610	Pc13g05610 protein. (288 aa)
	Pc13g04580	Pc13g04580 protein. (340 aa)
	Pc13g02490	Pc13g02490 protein. (700 aa)
	Pc12g05960	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (554 aa)
	Pc12g12300	Pc12g12300 protein. (291 aa)
	Pc06g01240	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (590 aa)
	Pc21g17270	Pc21g17270 protein. (745 aa)
	Pc22g12590	Small nuclear ribonucleoprotein Sm D3. (117 aa)
	Pc22g05330	Pc22g05330 protein. (339 aa)
	Pc21g03000	Pc21g03000 protein. (171 aa)

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLP1	Pc06g01240	B6HIW7	B6GW61	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.831
CLP1	Pc12g12300	B6HIW7	B6GYD4	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc12g12300 protein.	0.619
CLP1	Pc13g02490	B6HIW7	B6H1K6	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc13g02490 protein.	0.599
CLP1	Pc13g04580	B6HIW7	B6H2B2	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc13g04580 protein.	0.656
CLP1	Pc13g05610	B6HIW7	B6H2V9	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc13g05610 protein.	0.693
CLP1	Pc13g09050	B6HIW7	B6H4J7	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc13g09050 protein.	0.618
CLP1	Pc13g09250	B6HIW7	B6H4L7	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc13g09250 protein.	0.940
CLP1	Pc13g10700	B6HIW7	B6H406	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc13g10700 protein.	0.756
CLP1	Pc13g13950	B6HIW7	B6H565	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc13g13950 protein.	0.619
CLP1	Pc16g02770	B6HIW7	B6H7J1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc16g02770 protein.	0.647
CLP1	Pc16g08210	B6HIW7	B6H838	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc16g08210 protein.	0.638
CLP1	Pc16g10490	B6HIW7	B6H860	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc16g10490 protein.	0.991
CLP1	Pc21g12340	B6HIW7	B6HLB9	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc21g12340 protein.	0.599
CLP1	Pc21g14530	B6HIW7	B6HI56	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc21g14530 protein.	0.866
CLP1	Pc21g14600	B6HIW7	B6HI63	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc21g14600 protein.	0.828
CLP1	Pc21g20550	B6HIW7	B6HL05	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc21g20550 protein.	0.949
CLP1	Pc22g05330	B6HIW7	B6HUE6	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc22g05330 protein.	0.656
CLP1	Pc22g18930	B6HIW7	B6HVD7	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Pc22g18930 protein.	0.599
Pc06g01240	CLP1	B6GW61	B6HIW7	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	0.831
Pc06g01240	Pc12g05960	B6GW61	B6GZW9	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.806