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Hoch_0400 Hoch_0400 Hoch_0401 Hoch_0401 Hoch_0402 Hoch_0402 Hoch_0403 Hoch_0403 Hoch_5458 Hoch_5458 Hoch_5459 Hoch_5459
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Hoch_0400Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; KEGG: ank:AnaeK_3555 two component, sigma54 specific, transcriptional regulator, fis family. (471 aa)
Hoch_0401KEGG: hypothetical protein; K11761 chromatin structure-remodeling complex protein RSC7. (214 aa)
Hoch_0402PFAM: band 7 protein; SMART: band 7 protein; KEGG: hypothetical protein. (473 aa)
Hoch_0403PFAM: band 7 protein; SMART: band 7 protein; KEGG: flot1b; flotillin 1b; K07192 flotillin. (430 aa)
Hoch_5458Hypothetical protein; KEGG: afr:AFE_0484 DNA internalization-related competence protein ComEC/Rec2. (251 aa)
Hoch_5459PFAM: Carotenoid oxygenase; KEGG: gme:Gmet_2446 twin-arginine translocation pathway signal. (514 aa)
Your Current Organism:
Haliangium ochraceum
NCBI taxonomy Id: 502025
Other names: H. ochraceum DSM 14365, Haliangium ochraceum DSM 14365, Haliangium ochraceum SMP-2, Haliangium ochraceum str. DSM 14365, Haliangium ochraceum strain DSM 14365, myxobacterium SMP-2
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