22 items (Eggerthella sp. YY7918) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rtn-5	Hypothetical protein; EAL domain. (855 aa)
	BAK45812.1	Hypothetical protein. (928 aa)
	BAK45811.1	Hypothetical protein. (768 aa)
	BAK45685.1	GGDEF domain-containing protein. (58 aa)
	BAK45678.1	GGDEF domain-containing protein. (340 aa)
	BAK45677.1	Hypothetical protein. (429 aa)
	BAK45675.1	Hypothetical protein. (404 aa)
	BAK45674.1	Hypothetical protein. (404 aa)
	Rtn-6	Hypothetical protein; EAL domain. (820 aa)
	BAK45167.1	Hypothetical protein. (382 aa)
	BAK44990.1	Hypothetical protein. (750 aa)
	Rtn-4	Hypothetical protein; EAL domain. (854 aa)
	BAK44770.1	Hypothetical protein. (447 aa)
	dinB	Hypothetical protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (441 aa)
	BAK44163.1	Hypothetical protein. (564 aa)
	BAK43955.1	Hypothetical protein. (1002 aa)
	BAK43748.1	Hypothetical protein. (708 aa)
	BAK43689.1	Hypothetical protein. (208 aa)
	Rtn-3	EAL domain protein. (1344 aa)
	Rtn-2	Hypothetical protein; EAL domain. (1094 aa)
	Rtn	Hypothetical protein; EAL domain. (889 aa)
	BAK43387.1	GGDEF domain-containing protein. (800 aa)

Your Current Organism:

Eggerthella sp. YY7918

NCBI taxonomy Id: 502558
Other names: E. sp. YY7918

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAK43387.1	BAK43689.1	EGYY_01250	EGYY_04760	GGDEF domain-containing protein.	Hypothetical protein.	0.425
BAK43387.1	BAK43748.1	EGYY_01250	EGYY_05350	GGDEF domain-containing protein.	Hypothetical protein.	0.750
BAK43387.1	BAK43955.1	EGYY_01250	EGYY_07580	GGDEF domain-containing protein.	Hypothetical protein.	0.565
BAK43387.1	BAK44163.1	EGYY_01250	EGYY_09760	GGDEF domain-containing protein.	Hypothetical protein.	0.501
BAK43387.1	BAK44990.1	EGYY_01250	EGYY_18570	GGDEF domain-containing protein.	Hypothetical protein.	0.858
BAK43387.1	BAK45167.1	EGYY_01250	EGYY_20770	GGDEF domain-containing protein.	Hypothetical protein.	0.776
BAK43387.1	BAK45674.1	EGYY_01250	EGYY_26750	GGDEF domain-containing protein.	Hypothetical protein.	0.773
BAK43387.1	BAK45811.1	EGYY_01250	EGYY_28340	GGDEF domain-containing protein.	Hypothetical protein.	0.858
BAK43387.1	Rtn	EGYY_01250	EGYY_02910	GGDEF domain-containing protein.	Hypothetical protein; EAL domain.	0.583
BAK43387.1	Rtn-2	EGYY_01250	EGYY_03380	GGDEF domain-containing protein.	Hypothetical protein; EAL domain.	0.929
BAK43387.1	Rtn-3	EGYY_01250	EGYY_03540	GGDEF domain-containing protein.	EAL domain protein.	0.750
BAK43387.1	Rtn-4	EGYY_01250	EGYY_18140	GGDEF domain-containing protein.	Hypothetical protein; EAL domain.	0.914
BAK43387.1	Rtn-5	EGYY_01250	EGYY_20010	GGDEF domain-containing protein.	Hypothetical protein; EAL domain.	0.858
BAK43387.1	Rtn-6	EGYY_01250	EGYY_22840	GGDEF domain-containing protein.	Hypothetical protein; EAL domain.	0.792
BAK43689.1	BAK43387.1	EGYY_04760	EGYY_01250	Hypothetical protein.	GGDEF domain-containing protein.	0.425
BAK43689.1	BAK43748.1	EGYY_04760	EGYY_05350	Hypothetical protein.	Hypothetical protein.	0.822
BAK43689.1	BAK43955.1	EGYY_04760	EGYY_07580	Hypothetical protein.	Hypothetical protein.	0.790
BAK43689.1	BAK44163.1	EGYY_04760	EGYY_09760	Hypothetical protein.	Hypothetical protein.	0.508
BAK43689.1	BAK44990.1	EGYY_04760	EGYY_18570	Hypothetical protein.	Hypothetical protein.	0.843
BAK43689.1	BAK45167.1	EGYY_04760	EGYY_20770	Hypothetical protein.	Hypothetical protein.	0.802