(7 nodes) Snf7 family network (Paracoccidioides brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PADG_06914	Uncharacterized protein. (251 aa)
	PADG_02310	Uncharacterized protein. (207 aa)
	PADG_11865	Uncharacterized protein. (227 aa)
	PADG_08188	Vacuolar-sorting protein snf7. (222 aa)
	PADG_00240	Uncharacterized protein. (208 aa)
	PADG_01046	Uncharacterized protein. (501 aa)
	PADG_01682	Uncharacterized protein. (213 aa)

Your Current Organism:

Paracoccidioides brasiliensis

NCBI taxonomy Id: 502780
Other names: P. brasiliensis Pb18, Paracoccidioides brasiliensis Pb18

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PADG_00240	PADG_01046	C1G050	C1FZ20	Uncharacterized protein.	Uncharacterized protein.	0.653
PADG_00240	PADG_01682	C1G050	C1G416	Uncharacterized protein.	Uncharacterized protein.	0.935
PADG_00240	PADG_02310	C1G050	C1G2E4	Uncharacterized protein.	Uncharacterized protein.	0.721
PADG_00240	PADG_06914	C1G050	C1GI28	Uncharacterized protein.	Uncharacterized protein.	0.998
PADG_00240	PADG_08188	C1G050	C1GMA2	Uncharacterized protein.	Vacuolar-sorting protein snf7.	0.939
PADG_00240	PADG_11865	C1G050	A0A0A0HXD2	Uncharacterized protein.	Uncharacterized protein.	0.939
PADG_01046	PADG_00240	C1FZ20	C1G050	Uncharacterized protein.	Uncharacterized protein.	0.653
PADG_01046	PADG_01682	C1FZ20	C1G416	Uncharacterized protein.	Uncharacterized protein.	0.808
PADG_01046	PADG_02310	C1FZ20	C1G2E4	Uncharacterized protein.	Uncharacterized protein.	0.981
PADG_01046	PADG_06914	C1FZ20	C1GI28	Uncharacterized protein.	Uncharacterized protein.	0.891
PADG_01046	PADG_08188	C1FZ20	C1GMA2	Uncharacterized protein.	Vacuolar-sorting protein snf7.	0.992
PADG_01046	PADG_11865	C1FZ20	A0A0A0HXD2	Uncharacterized protein.	Uncharacterized protein.	0.982
PADG_01682	PADG_00240	C1G416	C1G050	Uncharacterized protein.	Uncharacterized protein.	0.935
PADG_01682	PADG_01046	C1G416	C1FZ20	Uncharacterized protein.	Uncharacterized protein.	0.808
PADG_01682	PADG_02310	C1G416	C1G2E4	Uncharacterized protein.	Uncharacterized protein.	0.863
PADG_01682	PADG_06914	C1G416	C1GI28	Uncharacterized protein.	Uncharacterized protein.	0.966
PADG_01682	PADG_08188	C1G416	C1GMA2	Uncharacterized protein.	Vacuolar-sorting protein snf7.	0.973
PADG_01682	PADG_11865	C1G416	A0A0A0HXD2	Uncharacterized protein.	Uncharacterized protein.	0.933
PADG_02310	PADG_00240	C1G2E4	C1G050	Uncharacterized protein.	Uncharacterized protein.	0.721
PADG_02310	PADG_01046	C1G2E4	C1FZ20	Uncharacterized protein.	Uncharacterized protein.	0.981