STRINGSTRING
N301_09269 N301_09269 N301_04398 N301_04398 N301_01960 N301_01960 N301_13001 N301_13001 N301_05925 N301_05925 N301_11912 N301_11912 N301_05798 N301_05798 N301_11947 N301_11947 N301_09484 N301_09484 N301_12859 N301_12859 N301_08403 N301_08403 N301_13087 N301_13087 N301_02003 N301_02003 N301_16709 N301_16709 N301_01623 N301_01623 N301_04300 N301_04300 N301_03515 N301_03515 N301_01430 N301_01430 N301_12360 N301_12360 N301_01431 N301_01431 N301_03765 N301_03765 N301_05214 N301_05214 N301_06613 N301_06613 N301_06652 N301_06652 N301_02431 N301_02431 N301_09846 N301_09846 N301_11033 N301_11033 N301_06205 N301_06205 N301_16783 N301_16783
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N301_09269Putative ATP-dependent RNA helicase DDX46. (997 aa)
N301_04398U2 small nuclear ribonucleoprotein A. (228 aa)
N301_01960Zinc finger matrin-type protein 5. (170 aa)
N301_13001U4/U6 small nuclear ribonucleoprotein Prp3. (684 aa)
N301_05925PHD finger-like domain-containing protein 5A. (93 aa)
N301_11912Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
N301_05798Splicing factor 3B subunit 4. (407 aa)
N301_11947Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
N301_09484Small nuclear ribonucleoprotein Sm D2. (60 aa)
N301_12859Splicing factor 3A subunit 3. (442 aa)
N301_08403U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (242 aa)
N301_13087U2 small nuclear ribonucleoprotein B. (214 aa)
N301_02003U4/U6.U5 tri-snRNP-associated protein 2. (334 aa)
N301_16709Splicing factor 3B subunit 3. (1217 aa)
N301_01623116 kDa U5 small nuclear ribonucleoprotein component. (938 aa)
N301_04300U5 small nuclear ribonucleoprotein 200 kDa helicase. (124 aa)
N301_03515RNA-binding protein 40. (449 aa)
N301_01430Splicing factor 3A subunit 2. (205 aa)
N301_12360Pre-mRNA-processing-splicing factor 8. (2302 aa)
N301_01431Uncharacterized protein. (111 aa)
N301_03765Pre-mRNA branch site protein p14. (125 aa)
N301_05214Small nuclear ribonucleoprotein G. (60 aa)
N301_06613Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (74 aa)
N301_06652U1 small nuclear ribonucleoprotein C. (157 aa)
N301_02431Splicing factor 3B subunit 1. (1292 aa)
N301_09846U4/U6 small nuclear ribonucleoprotein Prp4. (508 aa)
N301_11033U5 small nuclear ribonucleoprotein 40 kDa protein. (313 aa)
N301_06205Pre-mRNA-processing factor 6. (917 aa)
N301_16783Small nuclear ribonucleoprotein Sm D3. (126 aa)
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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