STRINGSTRING
N301_11912 N301_11912 N301_01623 N301_01623 N301_04300 N301_04300 N301_12360 N301_12360 N301_11033 N301_11033 N301_06205 N301_06205
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N301_11912Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
N301_01623116 kDa U5 small nuclear ribonucleoprotein component. (938 aa)
N301_04300U5 small nuclear ribonucleoprotein 200 kDa helicase. (124 aa)
N301_12360Pre-mRNA-processing-splicing factor 8. (2302 aa)
N301_11033U5 small nuclear ribonucleoprotein 40 kDa protein. (313 aa)
N301_06205Pre-mRNA-processing factor 6. (917 aa)
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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