STRINGSTRING
N301_14905 N301_14905 N301_07253 N301_07253 N301_05565 N301_05565 N301_11193 N301_11193 N301_07987 N301_07987 N301_04111 N301_04111 N301_10307 N301_10307 N301_14989 N301_14989 N301_09535 N301_09535 N301_16001 N301_16001 N301_06709 N301_06709 N301_13951 N301_13951 N301_01292 N301_01292 N301_15549 N301_15549
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N301_14905Ras-related protein Rab-1A. (197 aa)
N301_07253Ras-related protein Rab-8A. (166 aa)
N301_05565Protein C9orf72. (481 aa)
N301_11193Rab proteins geranylgeranyltransferase component A 2. (643 aa)
N301_07987Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (433 aa)
N301_04111WD repeat-containing protein 41. (441 aa)
N301_10307Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (332 aa)
N301_14989Ras-related protein Rab-10. (154 aa)
N301_09535Leishmanolysin-like peptidase. (586 aa)
N301_16001Ras-related protein Rab-39A. (119 aa)
N301_06709Smith-Magenis syndrome chromosomal region candidate 8. (791 aa)
N301_13951Ras-related protein Rab-10. (159 aa)
N301_01292Ras-related protein Rab-39A. (142 aa)
N301_15549Ras-related protein Rab-44. (209 aa)
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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