15 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_07388	Syntaxin-1B. (194 aa)
	N301_06763	Complexin-1. (124 aa)
	N301_07496	Synaptobrevin. (110 aa)
	N301_01388	Synaptosomal-associated protein 47. (420 aa)
	N301_15906	Syntaxin-3. (265 aa)
	N301_07270	Syntaxin-binding protein 1; Belongs to the STXBP/unc-18/SEC1 family. (473 aa)
	N301_07269	Syntaxin-binding protein 1; Belongs to the STXBP/unc-18/SEC1 family. (97 aa)
	N301_03526	Syntaxin-binding protein 3; Belongs to the STXBP/unc-18/SEC1 family. (573 aa)
	N301_15294	Vesicle-associated membrane protein 3. (97 aa)
	N301_10995	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (146 aa)
	N301_08262	Syntaxin-2; Belongs to the syntaxin family. (280 aa)
	N301_11596	Syntaxin-19; Belongs to the syntaxin family. (291 aa)
	N301_13902	Syntaxin-1A; Belongs to the syntaxin family. (284 aa)
	N301_00002	Vesicle-associated membrane protein 3. (43 aa)
	N301_15801	Synaptotagmin-1. (424 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00002	N301_01388	A0A0A0B0M4	A0A0A0A7Z7	Vesicle-associated membrane protein 3.	Synaptosomal-associated protein 47.	0.794
N301_00002	N301_03526	A0A0A0B0M4	A0A0A0AGW7	Vesicle-associated membrane protein 3.	Syntaxin-binding protein 3; Belongs to the STXBP/unc-18/SEC1 family.	0.783
N301_00002	N301_06763	A0A0A0B0M4	A0A0A0A248	Vesicle-associated membrane protein 3.	Complexin-1.	0.659
N301_00002	N301_07269	A0A0A0B0M4	A0A0A0ADS2	Vesicle-associated membrane protein 3.	Syntaxin-binding protein 1; Belongs to the STXBP/unc-18/SEC1 family.	0.783
N301_00002	N301_07270	A0A0A0B0M4	A0A0A0AAP7	Vesicle-associated membrane protein 3.	Syntaxin-binding protein 1; Belongs to the STXBP/unc-18/SEC1 family.	0.783
N301_00002	N301_07388	A0A0A0B0M4	A0A099ZWW7	Vesicle-associated membrane protein 3.	Syntaxin-1B.	0.761
N301_00002	N301_08262	A0A0A0B0M4	A0A0A0AMS0	Vesicle-associated membrane protein 3.	Syntaxin-2; Belongs to the syntaxin family.	0.761
N301_00002	N301_10995	A0A0A0B0M4	A0A0A0AJX2	Vesicle-associated membrane protein 3.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.794
N301_00002	N301_11596	A0A0A0B0M4	A0A0A0ASR4	Vesicle-associated membrane protein 3.	Syntaxin-19; Belongs to the syntaxin family.	0.753
N301_00002	N301_13902	A0A0A0B0M4	A0A0A0ATI4	Vesicle-associated membrane protein 3.	Syntaxin-1A; Belongs to the syntaxin family.	0.761
N301_00002	N301_15801	A0A0A0B0M4	A0A0A0B1G8	Vesicle-associated membrane protein 3.	Synaptotagmin-1.	0.490
N301_00002	N301_15906	A0A0A0B0M4	A0A0A0AA59	Vesicle-associated membrane protein 3.	Syntaxin-3.	0.761
N301_01388	N301_00002	A0A0A0A7Z7	A0A0A0B0M4	Synaptosomal-associated protein 47.	Vesicle-associated membrane protein 3.	0.794
N301_01388	N301_03526	A0A0A0A7Z7	A0A0A0AGW7	Synaptosomal-associated protein 47.	Syntaxin-binding protein 3; Belongs to the STXBP/unc-18/SEC1 family.	0.810
N301_01388	N301_06763	A0A0A0A7Z7	A0A0A0A248	Synaptosomal-associated protein 47.	Complexin-1.	0.780
N301_01388	N301_07269	A0A0A0A7Z7	A0A0A0ADS2	Synaptosomal-associated protein 47.	Syntaxin-binding protein 1; Belongs to the STXBP/unc-18/SEC1 family.	0.810
N301_01388	N301_07270	A0A0A0A7Z7	A0A0A0AAP7	Synaptosomal-associated protein 47.	Syntaxin-binding protein 1; Belongs to the STXBP/unc-18/SEC1 family.	0.810
N301_01388	N301_07388	A0A0A0A7Z7	A0A099ZWW7	Synaptosomal-associated protein 47.	Syntaxin-1B.	0.777
N301_01388	N301_07496	A0A0A0A7Z7	A0A0A0A262	Synaptosomal-associated protein 47.	Synaptobrevin.	0.842
N301_01388	N301_08262	A0A0A0A7Z7	A0A0A0AMS0	Synaptosomal-associated protein 47.	Syntaxin-2; Belongs to the syntaxin family.	0.780