5 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_15472	SH3 and multiple ankyrin repeat domains protein 3. (130 aa)
	N301_15471	SH3 and multiple ankyrin repeat domains protein 3. (995 aa)
	N301_11256	Disks large 3. (697 aa)
	N301_01449	Disks large-associated protein 2. (988 aa)
	N301_02883	Disks large-associated protein 3. (860 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_01449	N301_02883	A0A0A0A811	A0A0A0AT19	Disks large-associated protein 2.	Disks large-associated protein 3.	0.758
N301_01449	N301_11256	A0A0A0A811	A0A0A0A7R7	Disks large-associated protein 2.	Disks large 3.	0.791
N301_01449	N301_15471	A0A0A0A811	A0A0A0A7B3	Disks large-associated protein 2.	SH3 and multiple ankyrin repeat domains protein 3.	0.970
N301_01449	N301_15472	A0A0A0A811	A0A0A0A464	Disks large-associated protein 2.	SH3 and multiple ankyrin repeat domains protein 3.	0.846
N301_02883	N301_01449	A0A0A0AT19	A0A0A0A811	Disks large-associated protein 3.	Disks large-associated protein 2.	0.758
N301_02883	N301_11256	A0A0A0AT19	A0A0A0A7R7	Disks large-associated protein 3.	Disks large 3.	0.702
N301_02883	N301_15471	A0A0A0AT19	A0A0A0A7B3	Disks large-associated protein 3.	SH3 and multiple ankyrin repeat domains protein 3.	0.975
N301_02883	N301_15472	A0A0A0AT19	A0A0A0A464	Disks large-associated protein 3.	SH3 and multiple ankyrin repeat domains protein 3.	0.846
N301_11256	N301_01449	A0A0A0A7R7	A0A0A0A811	Disks large 3.	Disks large-associated protein 2.	0.791
N301_11256	N301_02883	A0A0A0A7R7	A0A0A0AT19	Disks large 3.	Disks large-associated protein 3.	0.702
N301_11256	N301_15471	A0A0A0A7R7	A0A0A0A7B3	Disks large 3.	SH3 and multiple ankyrin repeat domains protein 3.	0.758
N301_11256	N301_15472	A0A0A0A7R7	A0A0A0A464	Disks large 3.	SH3 and multiple ankyrin repeat domains protein 3.	0.724
N301_15471	N301_01449	A0A0A0A7B3	A0A0A0A811	SH3 and multiple ankyrin repeat domains protein 3.	Disks large-associated protein 2.	0.970
N301_15471	N301_02883	A0A0A0A7B3	A0A0A0AT19	SH3 and multiple ankyrin repeat domains protein 3.	Disks large-associated protein 3.	0.975
N301_15471	N301_11256	A0A0A0A7B3	A0A0A0A7R7	SH3 and multiple ankyrin repeat domains protein 3.	Disks large 3.	0.758
N301_15471	N301_15472	A0A0A0A7B3	A0A0A0A464	SH3 and multiple ankyrin repeat domains protein 3.	SH3 and multiple ankyrin repeat domains protein 3.	0.969
N301_15472	N301_01449	A0A0A0A464	A0A0A0A811	SH3 and multiple ankyrin repeat domains protein 3.	Disks large-associated protein 2.	0.846
N301_15472	N301_02883	A0A0A0A464	A0A0A0AT19	SH3 and multiple ankyrin repeat domains protein 3.	Disks large-associated protein 3.	0.846
N301_15472	N301_11256	A0A0A0A464	A0A0A0A7R7	SH3 and multiple ankyrin repeat domains protein 3.	Disks large 3.	0.724
N301_15472	N301_15471	A0A0A0A464	A0A0A0A7B3	SH3 and multiple ankyrin repeat domains protein 3.	SH3 and multiple ankyrin repeat domains protein 3.	0.969