STRINGSTRING
N301_13109 N301_13109 N301_01166 N301_01166 N301_09588 N301_09588 N301_05205 N301_05205 N301_12366 N301_12366 N301_12552 N301_12552 N301_03808 N301_03808 N301_10582 N301_10582 N301_10436 N301_10436 N301_03398 N301_03398 N301_09076 N301_09076 N301_15431 N301_15431 N301_04076 N301_04076 N301_15288 N301_15288 N301_07915 N301_07915 N301_15388 N301_15388 N301_13280 N301_13280 N301_13279 N301_13279 N301_11094 N301_11094 N301_05513 N301_05513 N301_04733 N301_04733 N301_07013 N301_07013 N301_00100 N301_00100 N301_13824 N301_13824 N301_13847 N301_13847 N301_03164 N301_03164 N301_05919 N301_05919 N301_04659 N301_04659 N301_10853 N301_10853 N301_08681 N301_08681 N301_00246 N301_00246 N301_14067 N301_14067 N301_09246 N301_09246 N301_09007 N301_09007 N301_02757 N301_02757 N301_00792 N301_00792 N301_04481 N301_04481 N301_14409 N301_14409 N301_02495 N301_02495 N301_06030 N301_06030 N301_15864 N301_15864 N301_05481 N301_05481 N301_06014 N301_06014 N301_03929 N301_03929 N301_02330 N301_02330 N301_00449 N301_00449 N301_09614 N301_09614 N301_02628 N301_02628
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N301_13109Telomere length regulation protein TEL2. (686 aa)
N301_01166Oral cancer-overexpressed protein 1. (121 aa)
N301_09588X-ray repair cross-complementing protein 5. (697 aa)
N301_05205Werner syndrome ATP-dependent helicase. (1364 aa)
N301_12366Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (602 aa)
N301_12552H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (178 aa)
N301_03808Structural maintenance of chromosomes protein 6. (1095 aa)
N301_10582Telomere-associated protein RIF1. (2280 aa)
N301_10436Protection of telomeres protein 1. (786 aa)
N301_03398ATP-dependent DNA helicase; Belongs to the helicase family. (362 aa)
N301_09076TP53RK-binding protein; Belongs to the CGI121/TPRKB family. (175 aa)
N301_15431CS domain-containing protein. (146 aa)
N301_04076Uncharacterized protein. (249 aa)
N301_15288Zinc finger and BTB domain-containing protein 48. (378 aa)
N301_07915Protein artemis. (660 aa)
N301_15388DNA repair protein RAD51 3. (327 aa)
N301_13280Structure-specific endonuclease subunit SLX4. (419 aa)
N301_13279Structure-specific endonuclease subunit SLX4. (225 aa)
N301_11094DNA repair endonuclease XPF. (846 aa)
N301_05513DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family. (4094 aa)
N301_04733E3 SUMO-protein ligase NSE2. (227 aa)
N301_07013CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication. (375 aa)
N301_00100Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family. (700 aa)
N301_13824Uncharacterized protein. (1287 aa)
N301_13847Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (549 aa)
N301_03164CST complex subunit CTC1. (116 aa)
N301_05919X-ray repair cross-complementing protein 5. (598 aa)
N301_04659Uncharacterized protein. (127 aa)
N301_10853F-box only protein 4. (396 aa)
N301_08681Telomeric repeat-binding factor 2-interacting protein 1. (173 aa)
N301_00246Checkpoint protein HUS1. (266 aa)
N301_14067Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family. (2667 aa)
N301_09246DNA repair protein RAD50. (1312 aa)
N301_09007PIN2/TERF1-interacting telomerase inhibitor 1. (188 aa)
N301_02757Regulator of nonsense transcripts 1. (1054 aa)
N301_007925' exonuclease Apollo. (303 aa)
N301_04481DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (160 aa)
N301_14409H/ACA ribonucleoprotein complex subunit 4. (466 aa)
N301_02495INO80 complex subunit D. (924 aa)
N301_06030RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (409 aa)
N301_15864Nuclear factor related to kappa-B-binding protein. (1306 aa)
N301_05481DNA repair protein XRCC3. (347 aa)
N301_06014Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1251 aa)
N301_03929Zinc finger protein 827. (1057 aa)
N301_02330Adrenocortical dysplasia protein. (343 aa)
N301_00449DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
N301_09614Ubiquitin carboxyl-terminal hydrolase. (268 aa)
N301_02628G1/S-specific cyclin-E2; Belongs to the cyclin family. (399 aa)
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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