54 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_06031	Protein transport protein Sec61 subunit alpha isoform 1. (475 aa)
	N301_15704	Nascent polypeptide-associated complex subunit alpha. (135 aa)
	N301_12349	Rab5 GDP/GTP exchange factor. (491 aa)
	N301_12736	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (215 aa)
	N301_11554	Golgin subfamily A member 7B. (153 aa)
	N301_01477	Rab-3A-interacting protein. (468 aa)
	N301_16689	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (514 aa)
	N301_16721	Protein transport protein Sec61 subunit gamma. (66 aa)
	N301_07853	Translocating chain-associated membrane protein 2. (312 aa)
	N301_11713	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (285 aa)
	N301_08371	Vacuolar protein sorting-associated protein 37C. (222 aa)
	N301_10185	MICAL-like 1. (847 aa)
	N301_06317	Signal recognition particle subunit SRP68. (568 aa)
	N301_16174	Peroxisome assembly protein 26. (212 aa)
	N301_03211	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (380 aa)
	N301_00201	Aquaporin-11. (238 aa)
	N301_13751	Glucagon-like peptide 1 receptor; Belongs to the G-protein coupled receptor 2 family. (436 aa)
	N301_14137	Golgin subfamily A member 7. (101 aa)
	N301_08413	Vacuolar protein sorting-associated protein 37B. (252 aa)
	N301_13494	Partitioning defective 3. (1235 aa)
	N301_10863	Tetratricopeptide repeat protein 33. (261 aa)
	N301_11956	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (299 aa)
	N301_00995	Peroxisomal membrane protein PEX16. (264 aa)
	N301_06410	Signal recognition particle 9 kDa protein. (64 aa)
	N301_10494	Golgi to ER traffic protein 4. (264 aa)
	N301_10484	MICAL-like 2. (788 aa)
	N301_15882	Signal recognition particle receptor subunit alpha. (601 aa)
	N301_04631	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (265 aa)
	N301_06877	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (322 aa)
	N301_05502	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (258 aa)
	N301_12531	78 kDa glucose-regulated protein; Belongs to the heat shock protein 70 family. (612 aa)
	N301_13147	Signal recognition particle subunit SRP72. (645 aa)
	N301_02939	Signal recognition particle 19 kDa protein. (124 aa)
	N301_00568	Translocation protein SEC62. (388 aa)
	N301_00525	Translocon-associated protein subunit gamma. (123 aa)
	N301_08583	Signal recognition particle 14 kDa protein. (103 aa)
	N301_01767	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (432 aa)
	N301_05730	Small glutamine-rich tetratricopeptide repeat-containing protein alpha. (312 aa)
	N301_15432	Nascent polypeptide-associated complex subunit alpha, muscle-specific form. (183 aa)
	N301_15163	UNC93-like MFSD11. (449 aa)
	N301_10218	Voltage-dependent calcium channel gamma-2 subunit; Regulates the trafficking and gating properties of AMPA- selective glutamate receptors (AMPARs). Promotes their targeting to the cell membrane and synapses and modulates their gating properties by slowing their rates of activation, deactivation and desensitization. Does not show subunit-specific AMPA receptor regulation and regulates all AMPAR subunits. Thought to stabilize the calcium channel in an inactivated (closed) state; Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily. (323 aa)
	N301_07042	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (323 aa)
	N301_01746	Peroxisomal biogenesis factor 3. (345 aa)
	N301_01944	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (252 aa)
	N301_04078	Small glutamine-rich tetratricopeptide repeat-containing protein beta. (304 aa)
	N301_11813	Translocating chain-associated membrane protein 1-like 1. (333 aa)
	N301_13390	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (342 aa)
	N301_09354	Translocon-associated protein subunit alpha. (242 aa)
	N301_01946	Vacuolar protein sorting-associated protein 37A. (353 aa)
	N301_12275	Neutrophil cytosol factor 1. (386 aa)
	N301_04529	Protein transport protein Sec61 subunit beta. (96 aa)
	SRP54	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (504 aa)
	N301_02185	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (275 aa)
	N301_14182	1-phosphatidylinositol 3-phosphate 5-kinase. (1500 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00525	N301_04529	A0A0A0AE66	A0A0A0AIR8	Translocon-associated protein subunit gamma.	Protein transport protein Sec61 subunit beta.	0.978
N301_00525	N301_06031	A0A0A0AE66	A0A0A0AT45	Translocon-associated protein subunit gamma.	Protein transport protein Sec61 subunit alpha isoform 1.	0.918
N301_00525	N301_09354	A0A0A0AE66	A0A0A0AI84	Translocon-associated protein subunit gamma.	Translocon-associated protein subunit alpha.	0.993
N301_00525	N301_16721	A0A0A0AE66	A0A0A0ATF1	Translocon-associated protein subunit gamma.	Protein transport protein Sec61 subunit gamma.	0.815
N301_00568	N301_02939	A0A0A0AEA7	A0A0A0B277	Translocation protein SEC62.	Signal recognition particle 19 kDa protein.	0.463
N301_00568	N301_04529	A0A0A0AEA7	A0A0A0AIR8	Translocation protein SEC62.	Protein transport protein Sec61 subunit beta.	0.959
N301_00568	N301_06031	A0A0A0AEA7	A0A0A0AT45	Translocation protein SEC62.	Protein transport protein Sec61 subunit alpha isoform 1.	0.979
N301_00568	N301_12531	A0A0A0AEA7	A0A0A0B169	Translocation protein SEC62.	78 kDa glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.659
N301_00568	N301_15882	A0A0A0AEA7	A0A0A0AVM3	Translocation protein SEC62.	Signal recognition particle receptor subunit alpha.	0.576
N301_00568	N301_16721	A0A0A0AEA7	A0A0A0ATF1	Translocation protein SEC62.	Protein transport protein Sec61 subunit gamma.	0.978
N301_00568	SRP54	A0A0A0AEA7	A0A0A0AMW9	Translocation protein SEC62.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.461
N301_00995	N301_01746	A0A0A0A1Q7	A0A0A0A913	Peroxisomal membrane protein PEX16.	Peroxisomal biogenesis factor 3.	0.890
N301_00995	N301_16174	A0A0A0A1Q7	A0A0A0A769	Peroxisomal membrane protein PEX16.	Peroxisome assembly protein 26.	0.557
N301_01746	N301_00995	A0A0A0A913	A0A0A0A1Q7	Peroxisomal biogenesis factor 3.	Peroxisomal membrane protein PEX16.	0.890
N301_01746	N301_06031	A0A0A0A913	A0A0A0AT45	Peroxisomal biogenesis factor 3.	Protein transport protein Sec61 subunit alpha isoform 1.	0.463
N301_01767	N301_11554	A0A0A0AC62	A0A0A0APJ9	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Golgin subfamily A member 7B.	0.722
N301_01767	N301_14137	A0A0A0AC62	A0A0A0A4D3	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Golgin subfamily A member 7.	0.722
N301_01946	N301_08371	A0A0A0AII8	A0A0A0A8E9	Vacuolar protein sorting-associated protein 37A.	Vacuolar protein sorting-associated protein 37C.	0.887
N301_01946	N301_08413	A0A0A0AII8	A0A0A0A4A4	Vacuolar protein sorting-associated protein 37A.	Vacuolar protein sorting-associated protein 37B.	0.905
N301_02185	N301_03211	A0A0A0AN31	A0A0A0A6P4	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.461