80 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_10550	ADP-ribosylation factor-like 8B-A; Belongs to the small GTPase superfamily. Arf family. (143 aa)
	N301_08941	Paraplegin. (738 aa)
	N301_15534	Coatomer subunit gamma-1. (863 aa)
	N301_06889	Intraflagellar transport protein 88. (830 aa)
	N301_02730	Double-stranded RNA-binding protein Staufen 2. (570 aa)
	N301_11678	Actin-related protein 10; Belongs to the actin family. (392 aa)
	N301_11360	Peroxisomal membrane protein PEX14. (351 aa)
	N301_07615	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family. (634 aa)
	N301_02461	Trafficking kinesin-binding protein 2. (847 aa)
	N301_15843	Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family. (647 aa)
	N301_01439	Protein bicaudal D 1. (908 aa)
	N301_11372	Transmembrane protein 201. (633 aa)
	N301_14402	SNARE-associated protein Snapin. (90 aa)
	N301_00744	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (100 aa)
	N301_10686	Biogenesis of lysosome-related organelles complex 1 subunit 2. (117 aa)
	N301_16435	Bicaudal D-related protein 1. (378 aa)
	N301_04906	X-linked retinitis pigmentosa GTPase regulator. (720 aa)
	N301_11364	Kinesin-like KIF1B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1746 aa)
	N301_10730	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (388 aa)
	N301_01978	Melanoregulin. (169 aa)
	N301_04176	Lebercilin. (416 aa)
	N301_02176	Intraflagellar transport protein 43. (163 aa)
	N301_15480	Bardet-Biedl syndrome 12 protein. (715 aa)
	N301_11079	Nuclear distribution protein nudE 1. (344 aa)
	N301_01572	Rho GTPase-activating protein 21. (1960 aa)
	N301_12739	WD repeat-containing protein 34. (489 aa)
	N301_02070	RAS guanyl-releasing protein 1. (776 aa)
	N301_04525	Biogenesis of lysosome-related organelles complex 1 subunit 4. (136 aa)
	N301_03796	WD repeat-containing protein 35. (1160 aa)
	N301_05786	TRAF3-interacting protein 1. (591 aa)
	N301_11741	Intraflagellar transport protein 57. (360 aa)
	N301_09361	Eukaryotic translation elongation factor 1 epsilon-1. (145 aa)
	N301_08825	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (915 aa)
	N301_09136	Biogenesis of lysosome-related organelles complex 1 subunit 6. (115 aa)
	N301_09360	Biogenesis of lysosome-related organelles complex 1 subunit 5. (150 aa)
	N301_10772	Serine/threonine-protein kinase MAK. (629 aa)
	N301_03302	Cytosolic carboxypeptidase 6. (79 aa)
	N301_08843	AP-3 complex subunit mu-2; Belongs to the adaptor complexes medium subunit family. (378 aa)
	N301_01850	WD repeat-containing protein 19. (1341 aa)
	N301_05159	Tctex1 domain-containing protein 2. (105 aa)
	N301_10751	Dysbindin. (332 aa)
	N301_03267	Heat shock protein beta-11. (104 aa)
	N301_12028	Pericentriolar material 1 protein. (1900 aa)
	N301_10438	ADP-ribosylation factor-like 8B; Belongs to the small GTPase superfamily. Arf family. (129 aa)
	N301_07991	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (871 aa)
	N301_04108	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1030 aa)
	N301_10567	Intraflagellar transport protein 122. (1150 aa)
	N301_16022	Huntingtin. (3065 aa)
	N301_08115	Intraflagellar transport protein 20. (93 aa)
	N301_01081	Serine/threonine-protein kinase ICK. (628 aa)
	N301_06994	ADP-ribosylation factor-like 3; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	N301_15661	F-box/WD repeat-containing protein 11. (552 aa)
	N301_10166	SUN domain-containing protein 2. (670 aa)
	N301_10217	Intraflagellar transport protein 27. (175 aa)
	N301_06998	UPF0693 protein C10orf32. (113 aa)
	N301_13682	Spastin; Belongs to the AAA ATPase family. (478 aa)
	PAFAH1B1	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
	N301_08421	Intraflagellar transport protein 81. (676 aa)
	N301_04449	Cytoplasmic dynein 2 light intermediate chain 1. (349 aa)
	N301_08528	ADP-ribosylation factor-like 8A; Belongs to the small GTPase superfamily. Arf family. (143 aa)
	N301_03734	Intraflagellar transport protein 46. (273 aa)
	N301_12240	Nuclear distribution protein nudE-like 1. (315 aa)
	N301_03150	Sperm-associated antigen 17. (159 aa)
	N301_07284	Protein MEF2BNB. (59 aa)
	N301_16308	Loss of heterozygosity 12 chromosomal region 1 protein. (176 aa)
	N301_11944	FYVE and coiled-coil domain-containing protein 1. (1493 aa)
	N301_13513	Sjoegren syndrome nuclear autoantigen 1. (112 aa)
	N301_11937	Transmembrane protein 108. (362 aa)
	N301_08090	Mitochondrial Rho GTPase 1. (625 aa)
	N301_01792	AP-3 complex subunit beta-2. (1038 aa)
	N301_13499	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (923 aa)
	N301_11962	Trafficking kinesin-binding protein 1. (961 aa)
	N301_03049	Tetratricopeptide repeat protein 30A. (527 aa)
	N301_05893	Tetratricopeptide repeat protein 26. (508 aa)
	N301_03083	Cytoplasmic dynein 1 intermediate chain 2. (629 aa)
	N301_08018	Intraflagellar transport protein 52. (437 aa)
	N301_10495	SUN domain-containing protein 1. (866 aa)
	N301_16766	Mitochondrial Rho GTPase 2. (606 aa)
	N301_13431	Syntabulin. (641 aa)
	N301_06911	Double-stranded RNA-binding protein Staufen 1. (695 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00744	N301_01850	A0A0A0ASE6	A0A0A0AG70	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	WD repeat-containing protein 19.	0.555
N301_00744	N301_03049	A0A0A0ASE6	A0A0A0A0T2	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Tetratricopeptide repeat protein 30A.	0.422
N301_00744	N301_03083	A0A0A0ASE6	A0A099ZZ66	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Cytoplasmic dynein 1 intermediate chain 2.	0.752
N301_00744	N301_03267	A0A0A0ASE6	A0A0A0AEL6	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Heat shock protein beta-11.	0.623
N301_00744	N301_03734	A0A0A0ASE6	A0A0A0A6U9	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Intraflagellar transport protein 46.	0.678
N301_00744	N301_03796	A0A0A0ASE6	A0A0A0AKF9	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	WD repeat-containing protein 35.	0.537
N301_00744	N301_04449	A0A0A0ASE6	A0A0A0A886	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Cytoplasmic dynein 2 light intermediate chain 1.	0.535
N301_00744	N301_05786	A0A0A0ASE6	A0A0A0AKC0	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	TRAF3-interacting protein 1.	0.558
N301_00744	N301_05893	A0A0A0ASE6	A0A0A0A0M3	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Tetratricopeptide repeat protein 26.	0.664
N301_00744	N301_06889	A0A0A0ASE6	A0A0A0AXC5	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Intraflagellar transport protein 88.	0.694
N301_00744	N301_08018	A0A0A0ASE6	A0A099ZZ00	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Intraflagellar transport protein 52.	0.665
N301_00744	N301_08115	A0A0A0ASE6	A0A0A0ABP8	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Intraflagellar transport protein 20.	0.631
N301_00744	N301_08421	A0A0A0ASE6	A0A0A0A8U9	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Intraflagellar transport protein 81.	0.559
N301_00744	N301_08825	A0A0A0ASE6	A0A0A0AIQ9	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.553
N301_00744	N301_10217	A0A0A0ASE6	A0A0A0A9K8	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Intraflagellar transport protein 27.	0.429
N301_00744	N301_10567	A0A0A0ASE6	A0A0A0ADI6	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Intraflagellar transport protein 122.	0.442
N301_00744	N301_11364	A0A0A0ASE6	A0A0A0AQV2	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like KIF1B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.637
N301_00744	N301_11678	A0A0A0ASE6	A0A0A0B3P3	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Actin-related protein 10; Belongs to the actin family.	0.635
N301_00744	N301_11741	A0A0A0ASE6	A0A0A0AJW0	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Intraflagellar transport protein 57.	0.665
N301_00744	N301_12739	A0A0A0ASE6	A0A0A0AMN8	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	WD repeat-containing protein 34.	0.504