5 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_03435	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1. (186 aa)
	N301_02971	Protein-arginine deiminase type-2. (667 aa)
	N301_02972	Protein-arginine deiminase type-1. (624 aa)
	N301_08597	Arginase. (278 aa)
	N301_15774	Uncharacterized protein; Belongs to the arginase family. (246 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_03435	N301_08597	A0A0A0AGP1	A0A0A0ABY1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1.	Arginase.	0.689
N301_03435	N301_15774	A0A0A0AGP1	A0A0A0ATK1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1.	Uncharacterized protein; Belongs to the arginase family.	0.689
N301_08597	N301_03435	A0A0A0ABY1	A0A0A0AGP1	Arginase.	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1.	0.689
N301_08597	N301_15774	A0A0A0ABY1	A0A0A0ATK1	Arginase.	Uncharacterized protein; Belongs to the arginase family.	0.829
N301_15774	N301_03435	A0A0A0ATK1	A0A0A0AGP1	Uncharacterized protein; Belongs to the arginase family.	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1.	0.689
N301_15774	N301_08597	A0A0A0ATK1	A0A0A0ABY1	Uncharacterized protein; Belongs to the arginase family.	Arginase.	0.829