35 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_09240	Protein Shroom1. (358 aa)
	N301_06338	Lethal(2) giant larvae protein 2. (710 aa)
	N301_06913	Brefeldin A-inhibited guanine nucleotide-exchange protein 2. (1747 aa)
	N301_14849	Ras-related protein Rab-3C. (221 aa)
	N301_09241	Protein Shroom1. (164 aa)
	N301_11966	Rab effector MyRIP. (761 aa)
	N301_11962	Trafficking kinesin-binding protein 1. (961 aa)
	N301_11967	Rab effector MyRIP. (72 aa)
	N301_02326	Syntaxin-binding protein 5. (1101 aa)
	N301_03168	Syntaxin-binding protein 5-like. (1091 aa)
	N301_04840	Myosin regulatory light chain 2, smooth muscle minor isoform. (176 aa)
	N301_00971	Myosin-binding protein C, cardiac-type. (1254 aa)
	N301_04841	Myosin regulatory light chain 2, smooth muscle minor isoform. (176 aa)
	N301_14579	Ras-related protein Rab-11B. (205 aa)
	N301_16186	Caldesmon. (765 aa)
	N301_14716	Vezatin. (727 aa)
	N301_14916	Ras-related protein Rab-27B. (218 aa)
	N301_15686	Protein Shroom4. (155 aa)
	N301_07799	Ras-related protein Rab-3A. (160 aa)
	N301_15685	Protein Shroom4. (118 aa)
	N301_03306	Spermatogenesis-associated protein 6. (471 aa)
	N301_03291	Ras-related protein Rab-3B. (219 aa)
	N301_08209	Ras-related protein Rab-27A. (221 aa)
	N301_08236	La-related protein 6. (181 aa)
	N301_01972	Melanophilin. (678 aa)
	N301_05410	Myosin regulatory light polypeptide 9. (176 aa)
	N301_02081	Actin, alpha cardiac muscle 1; Belongs to the actin family. (370 aa)
	N301_14113	La-related protein 6. (175 aa)
	N301_12776	E3 ubiquitin-protein ligase TRIM32. (649 aa)
	N301_13951	Ras-related protein Rab-10. (159 aa)
	N301_02461	Trafficking kinesin-binding protein 2. (847 aa)
	N301_15211	Actin, alpha skeletal muscle. (377 aa)
	N301_05658	Unconventional myosin-XIX; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (967 aa)
	N301_01216	Ras-related protein Rab-25. (169 aa)
	N301_12271	Brefeldin A-inhibited guanine nucleotide-exchange protein 1. (1804 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00971	N301_02081	A0A0A0A511	A0A0A0AP83	Myosin-binding protein C, cardiac-type.	Actin, alpha cardiac muscle 1; Belongs to the actin family.	0.492
N301_00971	N301_04840	A0A0A0A511	A0A0A0A4W9	Myosin-binding protein C, cardiac-type.	Myosin regulatory light chain 2, smooth muscle minor isoform.	0.510
N301_00971	N301_04841	A0A0A0A511	A0A0A0A5C0	Myosin-binding protein C, cardiac-type.	Myosin regulatory light chain 2, smooth muscle minor isoform.	0.510
N301_00971	N301_05410	A0A0A0A511	A0A0A0AMW1	Myosin-binding protein C, cardiac-type.	Myosin regulatory light polypeptide 9.	0.510
N301_00971	N301_15211	A0A0A0A511	A0A0A0AU99	Myosin-binding protein C, cardiac-type.	Actin, alpha skeletal muscle.	0.492
N301_01216	N301_03291	A0A0A0AUR7	A0A0A0AGA6	Ras-related protein Rab-25.	Ras-related protein Rab-3B.	0.505
N301_01216	N301_05658	A0A0A0AUR7	A0A0A0AUC8	Ras-related protein Rab-25.	Unconventional myosin-XIX; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.588
N301_01216	N301_07799	A0A0A0AUR7	A0A0A0AEI9	Ras-related protein Rab-25.	Ras-related protein Rab-3A.	0.511
N301_01216	N301_08209	A0A0A0AUR7	A0A0A0AIB3	Ras-related protein Rab-25.	Ras-related protein Rab-27A.	0.460
N301_01216	N301_13951	A0A0A0AUR7	A0A0A0ASJ9	Ras-related protein Rab-25.	Ras-related protein Rab-10.	0.503
N301_01216	N301_14849	A0A0A0AUR7	A0A099ZYN2	Ras-related protein Rab-25.	Ras-related protein Rab-3C.	0.508
N301_01216	N301_14916	A0A0A0AUR7	A0A0A0ABH1	Ras-related protein Rab-25.	Ras-related protein Rab-27B.	0.459
N301_02081	N301_00971	A0A0A0AP83	A0A0A0A511	Actin, alpha cardiac muscle 1; Belongs to the actin family.	Myosin-binding protein C, cardiac-type.	0.492
N301_02081	N301_04840	A0A0A0AP83	A0A0A0A4W9	Actin, alpha cardiac muscle 1; Belongs to the actin family.	Myosin regulatory light chain 2, smooth muscle minor isoform.	0.643
N301_02081	N301_04841	A0A0A0AP83	A0A0A0A5C0	Actin, alpha cardiac muscle 1; Belongs to the actin family.	Myosin regulatory light chain 2, smooth muscle minor isoform.	0.643
N301_02081	N301_05410	A0A0A0AP83	A0A0A0AMW1	Actin, alpha cardiac muscle 1; Belongs to the actin family.	Myosin regulatory light polypeptide 9.	0.643
N301_02081	N301_14579	A0A0A0AP83	A0A0A0A6W1	Actin, alpha cardiac muscle 1; Belongs to the actin family.	Ras-related protein Rab-11B.	0.433
N301_02081	N301_15685	A0A0A0AP83	A0A0A0AEX9	Actin, alpha cardiac muscle 1; Belongs to the actin family.	Protein Shroom4.	0.435
N301_02081	N301_15686	A0A0A0AP83	A0A0A0ABU9	Actin, alpha cardiac muscle 1; Belongs to the actin family.	Protein Shroom4.	0.435
N301_02081	N301_16186	A0A0A0AP83	A0A0A0A778	Actin, alpha cardiac muscle 1; Belongs to the actin family.	Caldesmon.	0.430