21 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_00794	Synaptotagmin-6. (441 aa)
	N301_16333	Synaptotagmin-11. (418 aa)
	N301_03075	Rap guanine nucleotide exchange factor 4. (998 aa)
	N301_09060	Regulating synaptic membrane exocytosis protein 1. (234 aa)
	N301_00956	Synaptotagmin-13. (429 aa)
	N301_13020	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family. (220 aa)
	N301_08517	Synaptotagmin-2. (404 aa)
	N301_10448	Calcium-dependent secretion activator 2. (1188 aa)
	N301_08207	Protein unc-13 C. (2160 aa)
	N301_15294	Vesicle-associated membrane protein 3. (97 aa)
	N301_08206	Protein unc-13 A. (110 aa)
	N301_11066	Synaptotagmin-17. (464 aa)
	N301_15037	Synaptotagmin-10. (472 aa)
	N301_02379	Synaptotagmin-4. (414 aa)
	N301_11394	45 kDa calcium-binding protein. (332 aa)
	N301_05802	Regulating synaptic membrane exocytosis protein 1. (828 aa)
	N301_09195	Protein unc-13 B. (110 aa)
	N301_02893	Regulating synaptic membrane exocytosis protein 3. (239 aa)
	N301_15801	Synaptotagmin-1. (424 aa)
	N301_10393	Synaptotagmin-15. (350 aa)
	N301_04325	Synaptotagmin-9. (443 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00794	N301_13020	A0A0A0ANL6	A0A0A0A7D4	Synaptotagmin-6.	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.	0.413
N301_00794	N301_15294	A0A0A0ANL6	A0A0A0AHP5	Synaptotagmin-6.	Vesicle-associated membrane protein 3.	0.491
N301_00956	N301_13020	A0A0A0A4Z9	A0A0A0A7D4	Synaptotagmin-13.	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.	0.413
N301_00956	N301_15294	A0A0A0A4Z9	A0A0A0AHP5	Synaptotagmin-13.	Vesicle-associated membrane protein 3.	0.490
N301_02379	N301_04325	A0A0A0AQ75	A0A0A0B204	Synaptotagmin-4.	Synaptotagmin-9.	0.612
N301_02379	N301_08206	A0A0A0AQ75	A0A0A0AK66	Synaptotagmin-4.	Protein unc-13 A.	0.442
N301_02379	N301_08207	A0A0A0AQ75	A0A0A0AHC5	Synaptotagmin-4.	Protein unc-13 C.	0.442
N301_02379	N301_08517	A0A0A0AQ75	A0A0A0A8D2	Synaptotagmin-4.	Synaptotagmin-2.	0.771
N301_02379	N301_09195	A0A0A0AQ75	A0A0A0ASW9	Synaptotagmin-4.	Protein unc-13 B.	0.442
N301_02379	N301_13020	A0A0A0AQ75	A0A0A0A7D4	Synaptotagmin-4.	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.	0.674
N301_02379	N301_15294	A0A0A0AQ75	A0A0A0AHP5	Synaptotagmin-4.	Vesicle-associated membrane protein 3.	0.754
N301_02379	N301_15801	A0A0A0AQ75	A0A0A0B1G8	Synaptotagmin-4.	Synaptotagmin-1.	0.771
N301_02893	N301_03075	A0A0A0AW44	A0A0A0A0V1	Regulating synaptic membrane exocytosis protein 3.	Rap guanine nucleotide exchange factor 4.	0.763
N301_02893	N301_05802	A0A0A0AW44	A0A0A0AR06	Regulating synaptic membrane exocytosis protein 3.	Regulating synaptic membrane exocytosis protein 1.	0.523
N301_02893	N301_08206	A0A0A0AW44	A0A0A0AK66	Regulating synaptic membrane exocytosis protein 3.	Protein unc-13 A.	0.813
N301_02893	N301_08207	A0A0A0AW44	A0A0A0AHC5	Regulating synaptic membrane exocytosis protein 3.	Protein unc-13 C.	0.813
N301_02893	N301_08517	A0A0A0AW44	A0A0A0A8D2	Regulating synaptic membrane exocytosis protein 3.	Synaptotagmin-2.	0.558
N301_02893	N301_09195	A0A0A0AW44	A0A0A0ASW9	Regulating synaptic membrane exocytosis protein 3.	Protein unc-13 B.	0.813
N301_02893	N301_15294	A0A0A0AW44	A0A0A0AHP5	Regulating synaptic membrane exocytosis protein 3.	Vesicle-associated membrane protein 3.	0.570
N301_02893	N301_15801	A0A0A0AW44	A0A0A0B1G8	Regulating synaptic membrane exocytosis protein 3.	Synaptotagmin-1.	0.558