(46 nodes) Clathrin binding network (Charadrius vociferus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_08517	Synaptotagmin-2. (404 aa)
	N301_04325	Synaptotagmin-9. (443 aa)
	N301_10393	Synaptotagmin-15. (350 aa)
	N301_15801	Synaptotagmin-1. (424 aa)
	N301_02955	Sodium channel and clathrin linker 1. (614 aa)
	N301_10376	Uncharacterized protein C14orf79. (312 aa)
	N301_14489	Phosphatidylinositol-binding clathrin assembly protein. (582 aa)
	N301_11867	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (157 aa)
	N301_11122	AP-2 complex subunit alpha-2. (921 aa)
	N301_13887	Huntingtin-interacting protein 1. (924 aa)
	N301_05808	Stromal membrane-associated protein 1. (407 aa)
	N301_06698	TOM1-like 2. (403 aa)
	N301_02379	Synaptotagmin-4. (414 aa)
	N301_00791	AP-4 complex subunit beta-1. (269 aa)
	N301_08309	Clathrin heavy chain 1. (1639 aa)
	N301_12709	Protein GPR107. (521 aa)
	N301_06715	Epsin-2. (529 aa)
	N301_00794	Synaptotagmin-6. (441 aa)
	N301_00728	Synaptotagmin-7. (360 aa)
	N301_04193	Clathrin coat assembly protein AP180. (694 aa)
	N301_15037	Synaptotagmin-10. (472 aa)
	N301_11066	Synaptotagmin-17. (464 aa)
	N301_12266	Leucine-rich repeat serine/threonine-protein kinase 2. (2493 aa)
	N301_10345	Putative tyrosine-protein phosphatase auxilin. (922 aa)
	N301_05144	LisH domain-containing protein ARMC9. (664 aa)
	N301_12324	AP-2 complex subunit beta. (937 aa)
	N301_08750	Cyclin-G-associated kinase. (1243 aa)
	N301_15379	Clathrin heavy chain 1. (1662 aa)
	N301_07423	Neuron-specific protein family member 2. (183 aa)
	N301_16094	Target of Myb protein 1. (284 aa)
	N301_13611	Low density lipoprotein receptor adapter protein 1. (124 aa)
	N301_00169	Phosphatidylinositol-binding clathrin assembly protein. (656 aa)
	N301_13433	Neuron-specific protein family member 1. (185 aa)
	N301_08414	Huntingtin-interacting protein 1-related protein. (891 aa)
	N301_03918	AP-4 complex accessory subunit tepsin. (343 aa)
	N301_11120	AP-2 complex subunit sigma. (64 aa)
	N301_00275	Stonin-2. (871 aa)
	N301_00956	Synaptotagmin-13. (429 aa)
	N301_06766	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (153 aa)
	N301_04834	AP-1 complex subunit beta-1. (925 aa)
	N301_14034	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	N301_00603	Clathrin interactor 1. (639 aa)
	N301_06397	TOM1-like 1. (236 aa)
	N301_08675	AP-1 complex subunit gamma. (826 aa)
	N301_14909	Aftiphilin. (879 aa)
	N301_16333	Synaptotagmin-11. (418 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00169	N301_00275	A0A0A0A9Q3	A0A0A0A5F2	Phosphatidylinositol-binding clathrin assembly protein.	Stonin-2.	0.755
N301_00169	N301_00603	A0A0A0A9Q3	A0A099ZZI5	Phosphatidylinositol-binding clathrin assembly protein.	Clathrin interactor 1.	0.685
N301_00169	N301_00791	A0A0A0A9Q3	A0A0A0AQ53	Phosphatidylinositol-binding clathrin assembly protein.	AP-4 complex subunit beta-1.	0.639
N301_00169	N301_02379	A0A0A0A9Q3	A0A0A0AQ75	Phosphatidylinositol-binding clathrin assembly protein.	Synaptotagmin-4.	0.668
N301_00169	N301_04325	A0A0A0A9Q3	A0A0A0B204	Phosphatidylinositol-binding clathrin assembly protein.	Synaptotagmin-9.	0.537
N301_00169	N301_04834	A0A0A0A9Q3	A0A0A0A3F1	Phosphatidylinositol-binding clathrin assembly protein.	AP-1 complex subunit beta-1.	0.675
N301_00169	N301_05808	A0A0A0A9Q3	A0A0A0AS39	Phosphatidylinositol-binding clathrin assembly protein.	Stromal membrane-associated protein 1.	0.437
N301_00169	N301_06715	A0A0A0A9Q3	A0A0A0ANR7	Phosphatidylinositol-binding clathrin assembly protein.	Epsin-2.	0.768
N301_00169	N301_06766	A0A0A0A9Q3	A0A0A0A4U6	Phosphatidylinositol-binding clathrin assembly protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.775
N301_00169	N301_08309	A0A0A0A9Q3	A0A0A0APC1	Phosphatidylinositol-binding clathrin assembly protein.	Clathrin heavy chain 1.	0.766
N301_00169	N301_08414	A0A0A0A9Q3	A0A0A0A8U3	Phosphatidylinositol-binding clathrin assembly protein.	Huntingtin-interacting protein 1-related protein.	0.772
N301_00169	N301_08517	A0A0A0A9Q3	A0A0A0A8D2	Phosphatidylinositol-binding clathrin assembly protein.	Synaptotagmin-2.	0.642
N301_00169	N301_08675	A0A0A0A9Q3	A0A099ZY85	Phosphatidylinositol-binding clathrin assembly protein.	AP-1 complex subunit gamma.	0.758
N301_00169	N301_08750	A0A0A0A9Q3	A0A0A0AEM4	Phosphatidylinositol-binding clathrin assembly protein.	Cyclin-G-associated kinase.	0.996
N301_00169	N301_10345	A0A0A0A9Q3	A0A0A0AG97	Phosphatidylinositol-binding clathrin assembly protein.	Putative tyrosine-protein phosphatase auxilin.	0.753
N301_00169	N301_11120	A0A0A0A9Q3	A0A0A0A5Y7	Phosphatidylinositol-binding clathrin assembly protein.	AP-2 complex subunit sigma.	0.619
N301_00169	N301_11122	A0A0A0A9Q3	A0A0A0AS81	Phosphatidylinositol-binding clathrin assembly protein.	AP-2 complex subunit alpha-2.	0.771
N301_00169	N301_12324	A0A0A0A9Q3	A0A0A0AFX4	Phosphatidylinositol-binding clathrin assembly protein.	AP-2 complex subunit beta.	0.675
N301_00169	N301_13611	A0A0A0A9Q3	A0A0A0AAA6	Phosphatidylinositol-binding clathrin assembly protein.	Low density lipoprotein receptor adapter protein 1.	0.537
N301_00169	N301_13887	A0A0A0A9Q3	A0A0A0AS65	Phosphatidylinositol-binding clathrin assembly protein.	Huntingtin-interacting protein 1.	0.750