17 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_11352	Exosome component 10. (854 aa)
	N301_02330	Adrenocortical dysplasia protein. (343 aa)
	N301_13152	Poly [ADP-ribose] polymerase. (1148 aa)
	N301_02937	M7GpppN-mRNA hydrolase. (419 aa)
	N301_12368	Telomerase-binding protein EST1A. (1377 aa)
	N301_11322	PAP-associated domain-containing protein 5. (501 aa)
	N301_13280	Structure-specific endonuclease subunit SLX4. (419 aa)
	N301_13279	Structure-specific endonuclease subunit SLX4. (225 aa)
	N301_03164	CST complex subunit CTC1. (116 aa)
	N301_04659	Uncharacterized protein. (127 aa)
	N301_09007	PIN2/TERF1-interacting telomerase inhibitor 1. (188 aa)
	N301_10634	Poly [ADP-ribose] polymerase. (1100 aa)
	N301_11094	DNA repair endonuclease XPF. (846 aa)
	N301_01151	N-acetyltransferase 10. (984 aa)
	N301_03398	ATP-dependent DNA helicase; Belongs to the helicase family. (362 aa)
	N301_09246	DNA repair protein RAD50. (1312 aa)
	N301_06320	CST complex subunit TEN1. (119 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_01151	N301_11352	A0A0A0AK69	A0A0A0ATR3	N-acetyltransferase 10.	Exosome component 10.	0.617
N301_02330	N301_03164	A0A0A0AZ25	A0A0A0A4S2	Adrenocortical dysplasia protein.	CST complex subunit CTC1.	0.664
N301_02330	N301_06320	A0A0A0AZ25	A0A099ZUW9	Adrenocortical dysplasia protein.	CST complex subunit TEN1.	0.736
N301_02937	N301_11352	A0A0A0B4Q6	A0A0A0ATR3	M7GpppN-mRNA hydrolase.	Exosome component 10.	0.492
N301_02937	N301_12368	A0A0A0B4Q6	A0A0A0AG19	M7GpppN-mRNA hydrolase.	Telomerase-binding protein EST1A.	0.434
N301_03164	N301_02330	A0A0A0A4S2	A0A0A0AZ25	CST complex subunit CTC1.	Adrenocortical dysplasia protein.	0.664
N301_03164	N301_06320	A0A0A0A4S2	A0A099ZUW9	CST complex subunit CTC1.	CST complex subunit TEN1.	0.987
N301_03398	N301_09246	A0A0A0AGL1	A0A099ZZ55	ATP-dependent DNA helicase; Belongs to the helicase family.	DNA repair protein RAD50.	0.849
N301_03398	N301_11094	A0A0A0AGL1	A0A0A0ANG6	ATP-dependent DNA helicase; Belongs to the helicase family.	DNA repair endonuclease XPF.	0.637
N301_04659	N301_09246	A0A0A0A3R5	A0A099ZZ55	Uncharacterized protein.	DNA repair protein RAD50.	0.588
N301_04659	N301_11094	A0A0A0A3R5	A0A0A0ANG6	Uncharacterized protein.	DNA repair endonuclease XPF.	0.999
N301_04659	N301_13279	A0A0A0A3R5	A0A0A0A9Q5	Uncharacterized protein.	Structure-specific endonuclease subunit SLX4.	0.923
N301_04659	N301_13280	A0A0A0A3R5	A0A0A0AA07	Uncharacterized protein.	Structure-specific endonuclease subunit SLX4.	0.923
N301_06320	N301_02330	A0A099ZUW9	A0A0A0AZ25	CST complex subunit TEN1.	Adrenocortical dysplasia protein.	0.736
N301_06320	N301_03164	A0A099ZUW9	A0A0A0A4S2	CST complex subunit TEN1.	CST complex subunit CTC1.	0.987
N301_09246	N301_03398	A0A099ZZ55	A0A0A0AGL1	DNA repair protein RAD50.	ATP-dependent DNA helicase; Belongs to the helicase family.	0.849
N301_09246	N301_04659	A0A099ZZ55	A0A0A0A3R5	DNA repair protein RAD50.	Uncharacterized protein.	0.588
N301_09246	N301_11094	A0A099ZZ55	A0A0A0ANG6	DNA repair protein RAD50.	DNA repair endonuclease XPF.	0.711
N301_09246	N301_13279	A0A099ZZ55	A0A0A0A9Q5	DNA repair protein RAD50.	Structure-specific endonuclease subunit SLX4.	0.580
N301_09246	N301_13280	A0A099ZZ55	A0A0A0AA07	DNA repair protein RAD50.	Structure-specific endonuclease subunit SLX4.	0.580