STRINGSTRING
N301_13382 N301_13382 N301_14656 N301_14656 N301_06440 N301_06440 N301_09903 N301_09903 N301_01279 N301_01279 N301_16243 N301_16243 N301_11155 N301_11155 N301_08847 N301_08847 N301_07888 N301_07888 N301_10326 N301_10326 N301_16472 N301_16472 N301_02175 N301_02175 N301_09140 N301_09140 SRP54 SRP54
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N301_13382Ras-related protein Rab-26. (192 aa)
N301_14656Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (192 aa)
N301_06440Transforming growth factor beta; Belongs to the TGF-beta family. (412 aa)
N301_09903Epithelial splicing regulatory protein 2. (697 aa)
N301_01279Dystroglycan. (882 aa)
N301_16243a_DG1_N2 domain-containing protein. (289 aa)
N301_11155Ectodysplasin-A; Belongs to the tumor necrosis factor family. (226 aa)
N301_08847DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (272 aa)
N301_07888Semaphorin-3C; Belongs to the semaphorin family. (751 aa)
N301_10326Protein wntless. (541 aa)
N301_16472Tumor necrosis factor receptor superfamily member EDAR. (446 aa)
N301_02175Transforming growth factor beta-3. (295 aa)
N301_09140Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (194 aa)
SRP54Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (504 aa)
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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