22 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_06320	CST complex subunit TEN1. (119 aa)
	N301_05323	Protein SMG7. (1131 aa)
	N301_15010	Tumor suppressor p53-binding protein 1. (1827 aa)
	N301_09246	DNA repair protein RAD50. (1312 aa)
	N301_08681	Telomeric repeat-binding factor 2-interacting protein 1. (173 aa)
	N301_10055	Homeobox-containing protein 1. (391 aa)
	N301_05919	X-ray repair cross-complementing protein 5. (598 aa)
	N301_03164	CST complex subunit CTC1. (116 aa)
	N301_07013	CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication. (375 aa)
	N301_07934	Regulator of nonsense transcripts 2. (1268 aa)
	N301_15288	Zinc finger and BTB domain-containing protein 48. (378 aa)
	N301_12368	Telomerase-binding protein EST1A. (1377 aa)
	N301_03398	ATP-dependent DNA helicase; Belongs to the helicase family. (362 aa)
	N301_10436	Protection of telomeres protein 1. (786 aa)
	N301_12366	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (602 aa)
	N301_11068	Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family. (3633 aa)
	N301_09588	X-ray repair cross-complementing protein 5. (697 aa)
	N301_13109	Telomere length regulation protein TEL2. (686 aa)
	N301_02757	Regulator of nonsense transcripts 1. (1054 aa)
	N301_04481	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (160 aa)
	N301_06014	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1251 aa)
	N301_02330	Adrenocortical dysplasia protein. (343 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_02330	N301_03164	A0A0A0AZ25	A0A0A0A4S2	Adrenocortical dysplasia protein.	CST complex subunit CTC1.	0.664
N301_02330	N301_06014	A0A0A0AZ25	A0A0A0AVZ0	Adrenocortical dysplasia protein.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.948
N301_02330	N301_06320	A0A0A0AZ25	A0A099ZUW9	Adrenocortical dysplasia protein.	CST complex subunit TEN1.	0.736
N301_02330	N301_07013	A0A0A0AZ25	A0A0A0A8Y6	Adrenocortical dysplasia protein.	CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication.	0.852
N301_02330	N301_08681	A0A0A0AZ25	A0A0A0A2J6	Adrenocortical dysplasia protein.	Telomeric repeat-binding factor 2-interacting protein 1.	0.956
N301_02330	N301_10436	A0A0A0AZ25	A0A0A0AGL5	Adrenocortical dysplasia protein.	Protection of telomeres protein 1.	0.988
N301_02757	N301_05323	A0A0A0APW8	A0A099ZVX3	Regulator of nonsense transcripts 1.	Protein SMG7.	0.958
N301_02757	N301_07934	A0A0A0APW8	A0A0A0ABX1	Regulator of nonsense transcripts 1.	Regulator of nonsense transcripts 2.	0.995
N301_02757	N301_11068	A0A0A0APW8	A0A0A0AJ93	Regulator of nonsense transcripts 1.	Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.	0.995
N301_02757	N301_12368	A0A0A0APW8	A0A0A0AG19	Regulator of nonsense transcripts 1.	Telomerase-binding protein EST1A.	0.986
N301_03164	N301_02330	A0A0A0A4S2	A0A0A0AZ25	CST complex subunit CTC1.	Adrenocortical dysplasia protein.	0.664
N301_03164	N301_06320	A0A0A0A4S2	A0A099ZUW9	CST complex subunit CTC1.	CST complex subunit TEN1.	0.987
N301_03164	N301_07013	A0A0A0A4S2	A0A0A0A8Y6	CST complex subunit CTC1.	CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication.	0.987
N301_03164	N301_08681	A0A0A0A4S2	A0A0A0A2J6	CST complex subunit CTC1.	Telomeric repeat-binding factor 2-interacting protein 1.	0.614
N301_03164	N301_10436	A0A0A0A4S2	A0A0A0AGL5	CST complex subunit CTC1.	Protection of telomeres protein 1.	0.817
N301_03398	N301_05919	A0A0A0AGL1	A0A0A0A425	ATP-dependent DNA helicase; Belongs to the helicase family.	X-ray repair cross-complementing protein 5.	0.802
N301_03398	N301_06014	A0A0A0AGL1	A0A0A0AVZ0	ATP-dependent DNA helicase; Belongs to the helicase family.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.857
N301_03398	N301_07013	A0A0A0AGL1	A0A0A0A8Y6	ATP-dependent DNA helicase; Belongs to the helicase family.	CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication.	0.615
N301_03398	N301_08681	A0A0A0AGL1	A0A0A0A2J6	ATP-dependent DNA helicase; Belongs to the helicase family.	Telomeric repeat-binding factor 2-interacting protein 1.	0.485
N301_03398	N301_09246	A0A0A0AGL1	A0A099ZZ55	ATP-dependent DNA helicase; Belongs to the helicase family.	DNA repair protein RAD50.	0.849