94 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_06362	Usher syndrome type-1G protein. (469 aa)
	N301_01650	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
	N301_01658	Sine oculis-binding protein. (708 aa)
	N301_13144	RE1-silencing transcription factor. (892 aa)
	N301_12701	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (392 aa)
	N301_12485	LIM/homeobox protein Lhx3. (247 aa)
	N301_16139	SLIT and NTRK-like 6. (841 aa)
	N301_14290	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (614 aa)
	N301_03991	Potassium voltage-gated channel subfamily KQT member 1; Belongs to the potassium channel family. (384 aa)
	N301_07640	Homeobox protein SIX4. (686 aa)
	N301_09665	Paired mesoderm homeobox protein 1. (157 aa)
	N301_03936	Endothelin-1 receptor; Belongs to the G-protein coupled receptor 1 family. (421 aa)
	N301_02578	Collagen triple helix repeat-containing protein 1. (194 aa)
	N301_06889	Intraflagellar transport protein 88. (830 aa)
	N301_07641	Homeobox protein six1b. (276 aa)
	N301_16063	Cytokine-like 1. (133 aa)
	N301_15787	Neuroblastoma suppressor of tumorigenicity 1. (186 aa)
	N301_14815	Complement C1q subcomponent subunit B. (131 aa)
	N301_11433	Transcription factor HES-5. (157 aa)
	N301_10374	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1211 aa)
	N301_06037	DNA helicase; Belongs to the MCM family. (886 aa)
	N301_16064	Homeobox protein GHOX-7. (142 aa)
	N301_01470	Leucine-rich repeat-containing G-protein coupled receptor 5. (843 aa)
	N301_13901	Meckel syndrome type 1 protein. (475 aa)
	N301_01997	Secreted frizzled-related protein 3. (160 aa)
	N301_02089	Forkhead box protein G1. (99 aa)
	N301_04598	Insulin-like growth factor I. (114 aa)
	N301_15478	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (96 aa)
	N301_10998	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1193 aa)
	N301_07812	Pejvakin. (72 aa)
	N301_10827	Tetratricopeptide repeat protein 39C. (529 aa)
	N301_15177	Uncharacterized protein. (167 aa)
	N301_00687	Protein Shroom2. (1444 aa)
	N301_15703	Malcavernin. (444 aa)
	N301_11312	Chromodomain-helicase-DNA-binding protein 7. (2125 aa)
	N301_12558	Protein transport protein Sec24B. (1167 aa)
	N301_09361	Eukaryotic translation elongation factor 1 epsilon-1. (145 aa)
	N301_08226	Disintegrin and metalloproteinase domain-containing protein 10. (731 aa)
	N301_00551	Otolin-1. (202 aa)
	N301_09360	Biogenesis of lysosome-related organelles complex 1 subunit 5. (150 aa)
	N301_03798	Protein odd-skipped-related 1. (249 aa)
	N301_01877	Glutaredoxin domain-containing cysteine-rich protein 1. (293 aa)
	N301_10764	Endothelin-1. (163 aa)
	N301_11308	Protein fantom. (1272 aa)
	N301_01871	Paired mesoderm homeobox protein 2B. (141 aa)
	N301_01850	WD repeat-containing protein 19. (1341 aa)
	N301_07945	GATA-binding factor 3. (444 aa)
	N301_10350	Tyrosine-protein kinase transmembrane receptor ROR1; Belongs to the protein kinase superfamily. Tyr protein kinase family. (803 aa)
	N301_02272	Complement C1q tumor necrosis factor-related protein 5. (242 aa)
	N301_07525	Anion exchange protein. (987 aa)
	N301_07861	Prestin. (733 aa)
	N301_06979	Homeobox protein goosecoid. (137 aa)
	N301_14768	Phosphatidylinositol phosphatase PTPRQ. (2349 aa)
	N301_08115	Intraflagellar transport protein 20. (93 aa)
	N301_16547	Gamma-aminobutyric acid receptor subunit alpha-5; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (420 aa)
	N301_01705	Jouberin. (1164 aa)
	N301_04746	Otoconin-90. (505 aa)
	N301_15677	Nipped-B-like. (148 aa)
	N301_01391	Transmembrane inner ear expressed protein. (92 aa)
	PAFAH1B1	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
	N301_14147	Noggin. (216 aa)
	N301_15675	Nipped-B protein. (751 aa)
	N301_13437	Otopetrin-1. (566 aa)
	N301_12233	Glutaredoxin domain-containing cysteine-rich protein 2. (246 aa)
	N301_15678	Nipped-B-like. (207 aa)
	N301_16616	Stimulated by retinoic acid 6. (621 aa)
	N301_10058	Frizzled-3; Belongs to the G-protein coupled receptor Fz/Smo family. (515 aa)
	N301_06464	Non-syndromic hearing impairment protein 5. (499 aa)
	N301_05639	Epithelial discoidin domain-containing receptor 1. (82 aa)
	N301_10884	Nipped-B-like. (82 aa)
	N301_08711	Leucine-rich repeat-containing protein 1. (472 aa)
	N301_09301	WD repeat-containing and planar cell polarity effector protein fritz. (472 aa)
	N301_01384	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (313 aa)
	N301_16314	Potassium voltage-gated channel subfamily KQT member 1. (82 aa)
	N301_07710	Homeobox protein DLX-5. (273 aa)
	N301_10886	Nipped-B-like. (206 aa)
	N301_10533	Thyroid receptor-interacting protein 11. (1928 aa)
	N301_12246	Netrin-1. (156 aa)
	N301_06447	Potassium channel subfamily K member 2; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (413 aa)
	N301_11110	Protein scribble. (459 aa)
	N301_09275	C-X-C motif chemokine 14. (94 aa)
	N301_02249	Protein Mpv17; Belongs to the peroxisomal membrane protein PXMP2/4 family. (102 aa)
	N301_10883	Nipped-B protein. (817 aa)
	N301_14665	PDZ domain-containing protein. (54 aa)
	N301_14664	PDZ domain-containing protein 7. (363 aa)
	N301_10513	Parvalbumin, thymic CPV3; Belongs to the parvalbumin family. (109 aa)
	N301_09744	Protocadherin-15. (1851 aa)
	N301_07434	Tetratricopeptide repeat protein 8. (470 aa)
	N301_10885	Nipped-B-like. (137 aa)
	N301_08040	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (176 aa)
	N301_11816	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (418 aa)
	N301_14656	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (192 aa)
	N301_08614	Prospero homeobox protein 1. (736 aa)
	N301_04402	Aldehyde dehydrogenase family 1 member A3; Belongs to the aldehyde dehydrogenase family. (489 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00551	N301_04746	A0A0A0AIG0	A0A0A0AAS8	Otolin-1.	Otoconin-90.	0.481
N301_00551	N301_13437	A0A0A0AIG0	A0A0A0A814	Otolin-1.	Otopetrin-1.	0.461
N301_00687	N301_11312	A0A0A0AKL5	A0A0A0AJS8	Protein Shroom2.	Chromodomain-helicase-DNA-binding protein 7.	0.455
N301_01384	N301_01997	A0A0A0A4Q5	A0A0A0APD0	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Secreted frizzled-related protein 3.	0.873
N301_01384	N301_10058	A0A0A0A4Q5	A0A0A0A5N2	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Frizzled-3; Belongs to the G-protein coupled receptor Fz/Smo family.	0.915
N301_01384	N301_10350	A0A0A0A4Q5	A0A0A0AEX2	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Tyrosine-protein kinase transmembrane receptor ROR1; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.531
N301_01384	N301_14656	A0A0A0A4Q5	A0A099ZYL3	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.406
N301_01384	N301_15177	A0A0A0A4Q5	A0A0A0AKX7	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Uncharacterized protein.	0.411
N301_01470	N301_07861	A0A0A0APR1	A0A0A0ACF5	Leucine-rich repeat-containing G-protein coupled receptor 5.	Prestin.	0.702
N301_01470	N301_14147	A0A0A0APR1	A0A0A0A8P5	Leucine-rich repeat-containing G-protein coupled receptor 5.	Noggin.	0.487
N301_01470	N301_14290	A0A0A0APR1	A0A0A0AZB3	Leucine-rich repeat-containing G-protein coupled receptor 5.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.431
N301_01470	N301_14815	A0A0A0APR1	A0A0A0AVI9	Leucine-rich repeat-containing G-protein coupled receptor 5.	Complement C1q subcomponent subunit B.	0.414
N301_01650	N301_12701	A0A0A0B4U2	A0A0A0B2X1	Autophagy protein 5; Involved in autophagic vesicle formation.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.592
N301_01705	N301_06889	A0A0A0AAW7	A0A0A0AXC5	Jouberin.	Intraflagellar transport protein 88.	0.509
N301_01705	N301_11308	A0A0A0AAW7	A0A0A0AGH0	Jouberin.	Protein fantom.	0.595
N301_01705	N301_13901	A0A0A0AAW7	A0A0A0APD3	Jouberin.	Meckel syndrome type 1 protein.	0.826
N301_01850	N301_06889	A0A0A0AG70	A0A0A0AXC5	WD repeat-containing protein 19.	Intraflagellar transport protein 88.	0.849
N301_01850	N301_08115	A0A0A0AG70	A0A0A0ABP8	WD repeat-containing protein 19.	Intraflagellar transport protein 20.	0.770
N301_01850	N301_11308	A0A0A0AG70	A0A0A0AGH0	WD repeat-containing protein 19.	Protein fantom.	0.507
N301_01871	N301_07945	A0A0A0AG86	A0A0A0AF25	Paired mesoderm homeobox protein 2B.	GATA-binding factor 3.	0.403