27 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_11633	Ninein. (1063 aa)
	N301_11632	Ninein-like. (98 aa)
	N301_02056	Ninein-like. (172 aa)
	N301_02498	Partitioning defective 3 B. (98 aa)
	N301_02501	Partitioning defective 3 B. (57 aa)
	N301_13494	Partitioning defective 3. (1235 aa)
	N301_16244	Protein asunder. (706 aa)
	N301_12240	Nuclear distribution protein nudE-like 1. (315 aa)
	PAFAH1B1	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
	N301_10166	SUN domain-containing protein 2. (670 aa)
	N301_16476	E3 SUMO-protein ligase RanBP2. (155 aa)
	N301_12633	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (457 aa)
	N301_08115	Intraflagellar transport protein 20. (93 aa)
	N301_01757	Ezrin. (582 aa)
	N301_16475	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
	N301_03527	G-protein-signaling modulator 2. (643 aa)
	N301_08860	TALPID3 protein. (1529 aa)
	N301_02290	Mitotic interactor and substrate of PLK1. (714 aa)
	N301_00694	Cytosolic Fe-S cluster assembly factor nubp1. (233 aa)
	N301_09955	TBCC domain-containing protein 1. (510 aa)
	N301_11079	Nuclear distribution protein nudE 1. (344 aa)
	N301_15494	Mitotic spindle assembly checkpoint protein MAD2A. (185 aa)
	N301_12732	Uncharacterized protein C9orf114. (350 aa)
	N301_02497	Partitioning defective 3 B. (124 aa)
	N301_02499	Partitioning defective 3 B. (148 aa)
	N301_02500	Partitioning defective 3 B. (281 aa)
	N301_10495	SUN domain-containing protein 1. (866 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_02497	N301_02498	A0A0A0AS89	A0A0A0AWG7	Partitioning defective 3 B.	Partitioning defective 3 B.	0.909
N301_02497	N301_02499	A0A0A0AS89	A0A0A0ATZ2	Partitioning defective 3 B.	Partitioning defective 3 B.	0.559
N301_02497	N301_02500	A0A0A0AS89	A0A0A0AU92	Partitioning defective 3 B.	Partitioning defective 3 B.	0.468
N301_02497	N301_03527	A0A0A0AS89	A0A0A0AI86	Partitioning defective 3 B.	G-protein-signaling modulator 2.	0.408
N301_02498	N301_02497	A0A0A0AWG7	A0A0A0AS89	Partitioning defective 3 B.	Partitioning defective 3 B.	0.909
N301_02498	N301_02499	A0A0A0AWG7	A0A0A0ATZ2	Partitioning defective 3 B.	Partitioning defective 3 B.	0.561
N301_02498	N301_02500	A0A0A0AWG7	A0A0A0AU92	Partitioning defective 3 B.	Partitioning defective 3 B.	0.470
N301_02498	N301_03527	A0A0A0AWG7	A0A0A0AI86	Partitioning defective 3 B.	G-protein-signaling modulator 2.	0.408
N301_02499	N301_02497	A0A0A0ATZ2	A0A0A0AS89	Partitioning defective 3 B.	Partitioning defective 3 B.	0.559
N301_02499	N301_02498	A0A0A0ATZ2	A0A0A0AWG7	Partitioning defective 3 B.	Partitioning defective 3 B.	0.561
N301_02499	N301_02500	A0A0A0ATZ2	A0A0A0AU92	Partitioning defective 3 B.	Partitioning defective 3 B.	0.899
N301_02499	N301_03527	A0A0A0ATZ2	A0A0A0AI86	Partitioning defective 3 B.	G-protein-signaling modulator 2.	0.408
N301_02500	N301_02497	A0A0A0AU92	A0A0A0AS89	Partitioning defective 3 B.	Partitioning defective 3 B.	0.468
N301_02500	N301_02498	A0A0A0AU92	A0A0A0AWG7	Partitioning defective 3 B.	Partitioning defective 3 B.	0.470
N301_02500	N301_02499	A0A0A0AU92	A0A0A0ATZ2	Partitioning defective 3 B.	Partitioning defective 3 B.	0.899
N301_02500	N301_03527	A0A0A0AU92	A0A0A0AI86	Partitioning defective 3 B.	G-protein-signaling modulator 2.	0.408
N301_02501	N301_03527	A0A0A0AV82	A0A0A0AI86	Partitioning defective 3 B.	G-protein-signaling modulator 2.	0.408
N301_03527	N301_02497	A0A0A0AI86	A0A0A0AS89	G-protein-signaling modulator 2.	Partitioning defective 3 B.	0.408
N301_03527	N301_02498	A0A0A0AI86	A0A0A0AWG7	G-protein-signaling modulator 2.	Partitioning defective 3 B.	0.408
N301_03527	N301_02499	A0A0A0AI86	A0A0A0ATZ2	G-protein-signaling modulator 2.	Partitioning defective 3 B.	0.408