18 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_13217	H/ACA ribonucleoprotein complex non-core subunit NAF1. (353 aa)
	N301_06320	CST complex subunit TEN1. (119 aa)
	N301_08629	Serine/threonine-protein kinase Nek2. (432 aa)
	N301_06417	Nuclear valosin-containing protein-like. (824 aa)
	N301_11960	Catenin beta-1. (777 aa)
	N301_10055	Homeobox-containing protein 1. (391 aa)
	N301_02299	Mitogen-activated protein kinase kinase kinase 4. (1546 aa)
	N301_08460	MAP kinase-activated protein kinase 5. (461 aa)
	N301_03398	ATP-dependent DNA helicase; Belongs to the helicase family. (362 aa)
	N301_10436	Protection of telomeres protein 1. (786 aa)
	N301_10983	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family. (514 aa)
	N301_11096	Poly(A)-specific ribonuclease PARN. (545 aa)
	N301_02067	Gremlin. (184 aa)
	N301_09007	PIN2/TERF1-interacting telomerase inhibitor 1. (188 aa)
	N301_15155	Uncharacterized protein. (93 aa)
	N301_01480	T-complex protein 1 subunit beta; Belongs to the TCP-1 chaperonin family. (534 aa)
	N301_02330	Adrenocortical dysplasia protein. (343 aa)
	N301_13152	Poly [ADP-ribose] polymerase. (1148 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_01480	N301_10983	A0A0A0APR9	A0A0A0AJ08	T-complex protein 1 subunit beta; Belongs to the TCP-1 chaperonin family.	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	0.999
N301_02330	N301_06320	A0A0A0AZ25	A0A099ZUW9	Adrenocortical dysplasia protein.	CST complex subunit TEN1.	0.736
N301_02330	N301_10436	A0A0A0AZ25	A0A0A0AGL5	Adrenocortical dysplasia protein.	Protection of telomeres protein 1.	0.988
N301_03398	N301_10436	A0A0A0AGL1	A0A0A0AGL5	ATP-dependent DNA helicase; Belongs to the helicase family.	Protection of telomeres protein 1.	0.546
N301_06320	N301_02330	A0A099ZUW9	A0A0A0AZ25	CST complex subunit TEN1.	Adrenocortical dysplasia protein.	0.736
N301_06320	N301_10436	A0A099ZUW9	A0A0A0AGL5	CST complex subunit TEN1.	Protection of telomeres protein 1.	0.659
N301_10436	N301_02330	A0A0A0AGL5	A0A0A0AZ25	Protection of telomeres protein 1.	Adrenocortical dysplasia protein.	0.988
N301_10436	N301_03398	A0A0A0AGL5	A0A0A0AGL1	Protection of telomeres protein 1.	ATP-dependent DNA helicase; Belongs to the helicase family.	0.546
N301_10436	N301_06320	A0A0A0AGL5	A0A099ZUW9	Protection of telomeres protein 1.	CST complex subunit TEN1.	0.659
N301_10436	N301_13152	A0A0A0AGL5	A0A0A0B1U0	Protection of telomeres protein 1.	Poly [ADP-ribose] polymerase.	0.492
N301_10983	N301_01480	A0A0A0AJ08	A0A0A0APR9	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family.	T-complex protein 1 subunit beta; Belongs to the TCP-1 chaperonin family.	0.999
N301_11960	N301_13152	A0A0A0A1M4	A0A0A0B1U0	Catenin beta-1.	Poly [ADP-ribose] polymerase.	0.475
N301_13152	N301_10436	A0A0A0B1U0	A0A0A0AGL5	Poly [ADP-ribose] polymerase.	Protection of telomeres protein 1.	0.492
N301_13152	N301_11960	A0A0A0B1U0	A0A0A0A1M4	Poly [ADP-ribose] polymerase.	Catenin beta-1.	0.475