15 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_14147	Noggin. (216 aa)
	N301_05049	Leucine-rich repeat transmembrane neuronal protein 1. (521 aa)
	N301_01620	Glial fibrillary acidic protein; Belongs to the intermediate filament family. (371 aa)
	N301_14892	Glutamate receptor ionotropic, NMDA 2A. (1320 aa)
	N301_10995	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (146 aa)
	N301_01158	SH3 and multiple ankyrin repeat domains protein 2. (1838 aa)
	N301_04653	Sodium/potassium/calcium exchanger 2; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (674 aa)
	N301_14036	Glia-derived nexin; Belongs to the serpin family. (396 aa)
	N301_05888	Glutamate receptor ionotropic, NMDA 2B. (1365 aa)
	N301_15658	Leucine-rich repeat transmembrane neuronal protein 2. (515 aa)
	N301_15471	SH3 and multiple ankyrin repeat domains protein 3. (995 aa)
	N301_01388	Synaptosomal-associated protein 47. (420 aa)
	N301_04375	Sodium/potassium/calcium exchanger 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (664 aa)
	N301_08690	Teashirt 3. (1066 aa)
	N301_01809	Neuroplastin. (233 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_01158	N301_15471	A0A0A0AK72	A0A0A0A7B3	SH3 and multiple ankyrin repeat domains protein 2.	SH3 and multiple ankyrin repeat domains protein 3.	0.900
N301_01620	N301_10995	A0A0A0ADJ0	A0A0A0AJX2	Glial fibrillary acidic protein; Belongs to the intermediate filament family.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.516
N301_05888	N301_14892	A0A0A0A554	A0A0A0ADJ2	Glutamate receptor ionotropic, NMDA 2B.	Glutamate receptor ionotropic, NMDA 2A.	0.995
N301_05888	N301_15471	A0A0A0A554	A0A0A0A7B3	Glutamate receptor ionotropic, NMDA 2B.	SH3 and multiple ankyrin repeat domains protein 3.	0.445
N301_10995	N301_01620	A0A0A0AJX2	A0A0A0ADJ0	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Glial fibrillary acidic protein; Belongs to the intermediate filament family.	0.516
N301_14892	N301_05888	A0A0A0ADJ2	A0A0A0A554	Glutamate receptor ionotropic, NMDA 2A.	Glutamate receptor ionotropic, NMDA 2B.	0.995
N301_15471	N301_01158	A0A0A0A7B3	A0A0A0AK72	SH3 and multiple ankyrin repeat domains protein 3.	SH3 and multiple ankyrin repeat domains protein 2.	0.900
N301_15471	N301_05888	A0A0A0A7B3	A0A0A0A554	SH3 and multiple ankyrin repeat domains protein 3.	Glutamate receptor ionotropic, NMDA 2B.	0.445