34 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_07835	Pre-mRNA-splicing factor CWC22. (870 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (76 aa)
	N301_06613	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (74 aa)
	N301_15713	Zinc finger matrin-type protein 2. (193 aa)
	N301_09846	U4/U6 small nuclear ribonucleoprotein Prp4. (508 aa)
	N301_04398	U2 small nuclear ribonucleoprotein A. (228 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	N301_02431	Splicing factor 3B subunit 1. (1292 aa)
	N301_01431	Uncharacterized protein. (111 aa)
	N301_12360	Pre-mRNA-processing-splicing factor 8. (2302 aa)
	N301_01430	Splicing factor 3A subunit 2. (205 aa)
	N301_03285	Pre-mRNA-splicing factor 38A. (312 aa)
	N301_11536	RING finger protein 113A. (320 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (88 aa)
	N301_04300	U5 small nuclear ribonucleoprotein 200 kDa helicase. (124 aa)
	N301_01623	116 kDa U5 small nuclear ribonucleoprotein component. (938 aa)
	N301_01822	Microfibrillar-associated protein 1. (413 aa)
	N301_16709	Splicing factor 3B subunit 3. (1217 aa)
	N301_05956	WW domain-binding protein 4. (400 aa)
	N301_12859	Splicing factor 3A subunit 3. (442 aa)
	N301_12852	Smad nuclear-interacting protein 1. (320 aa)
	N301_09484	Small nuclear ribonucleoprotein Sm D2. (60 aa)
	N301_14565	U6 snRNA-associated Sm-like LSm7. (100 aa)
	N301_11947	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	N301_05798	Splicing factor 3B subunit 4. (407 aa)
	N301_06205	Pre-mRNA-processing factor 6. (917 aa)
	N301_05675	WD40 repeat-containing protein SMU1. (513 aa)
	N301_05918	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	N301_03720	BUD13. (541 aa)
	N301_05925	PHD finger-like domain-containing protein 5A. (93 aa)
	N301_11912	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
	N301_03931	U6 snRNA-associated Sm-like LSm6. (80 aa)
	N301_16783	Small nuclear ribonucleoprotein Sm D3. (126 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	A0A0A0AT66	A0A0A0AYM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	A0A0A0AT66	A0A0A0AML1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	A0A0A0AT66	A0A0A0AFE9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	N301_01430	A0A0A0AT66	A0A0A0AH72	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3A subunit 2.	0.836
LSM3	N301_01431	A0A0A0AT66	A0A0A0AIJ4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.836
LSM3	N301_01623	A0A0A0AT66	A0A0A0ACG3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	116 kDa U5 small nuclear ribonucleoprotein component.	0.989
LSM3	N301_01822	A0A0A0AT66	A0A0A0AC50	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Microfibrillar-associated protein 1.	0.759
LSM3	N301_02431	A0A0A0AT66	A0A0A0ATR7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3B subunit 1.	0.910
LSM3	N301_03285	A0A0A0AT66	A0A0A0AG99	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor 38A.	0.762
LSM3	N301_03720	A0A0A0AT66	A0A0A0A279	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	BUD13.	0.803
LSM3	N301_03931	A0A0A0AT66	A0A0A0AXM8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like LSm6.	0.999
LSM3	N301_04300	A0A0A0AT66	A0A0A0AEJ5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.988
LSM3	N301_04398	A0A0A0AT66	A0A099ZYB4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U2 small nuclear ribonucleoprotein A.	0.942
LSM3	N301_05675	A0A0A0AT66	A0A099ZWS1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD40 repeat-containing protein SMU1.	0.686
LSM3	N301_05798	A0A0A0AT66	A0A0A0A2J5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3B subunit 4.	0.897
LSM3	N301_05918	A0A0A0AT66	A0A0A0A2I0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.961
LSM3	N301_05925	A0A0A0AT66	A0A0A0A0Q2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PHD finger-like domain-containing protein 5A.	0.946
LSM3	N301_05956	A0A0A0AT66	A0A0A0AAR0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WW domain-binding protein 4.	0.754
LSM3	N301_06205	A0A0A0AT66	A0A0A0B1I8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing factor 6.	0.960
LSM3	N301_06613	A0A0A0AT66	A0A0A0AQX1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.997