39 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_01792	AP-3 complex subunit beta-2. (1038 aa)
	N301_09136	Biogenesis of lysosome-related organelles complex 1 subunit 6. (115 aa)
	N301_09360	Biogenesis of lysosome-related organelles complex 1 subunit 5. (150 aa)
	N301_03302	Cytosolic carboxypeptidase 6. (79 aa)
	N301_16022	Huntingtin. (3065 aa)
	N301_11360	Peroxisomal membrane protein PEX14. (351 aa)
	N301_15534	Coatomer subunit gamma-1. (863 aa)
	N301_02461	Trafficking kinesin-binding protein 2. (847 aa)
	N301_01439	Protein bicaudal D 1. (908 aa)
	N301_11372	Transmembrane protein 201. (633 aa)
	N301_14402	SNARE-associated protein Snapin. (90 aa)
	N301_10686	Biogenesis of lysosome-related organelles complex 1 subunit 2. (117 aa)
	N301_16435	Bicaudal D-related protein 1. (378 aa)
	N301_10730	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (388 aa)
	N301_01978	Melanoregulin. (169 aa)
	N301_11079	Nuclear distribution protein nudE 1. (344 aa)
	N301_01572	Rho GTPase-activating protein 21. (1960 aa)
	N301_08843	AP-3 complex subunit mu-2; Belongs to the adaptor complexes medium subunit family. (378 aa)
	N301_10751	Dysbindin. (332 aa)
	N301_07991	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (871 aa)
	N301_04108	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1030 aa)
	N301_15661	F-box/WD repeat-containing protein 11. (552 aa)
	N301_10166	SUN domain-containing protein 2. (670 aa)
	N301_06998	UPF0693 protein C10orf32. (113 aa)
	N301_11678	Actin-related protein 10; Belongs to the actin family. (392 aa)
	N301_13682	Spastin; Belongs to the AAA ATPase family. (478 aa)
	PAFAH1B1	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
	N301_12240	Nuclear distribution protein nudE-like 1. (315 aa)
	N301_07284	Protein MEF2BNB. (59 aa)
	N301_16308	Loss of heterozygosity 12 chromosomal region 1 protein. (176 aa)
	N301_11944	FYVE and coiled-coil domain-containing protein 1. (1493 aa)
	N301_08090	Mitochondrial Rho GTPase 1. (625 aa)
	N301_11962	Trafficking kinesin-binding protein 1. (961 aa)
	N301_10495	SUN domain-containing protein 1. (866 aa)
	N301_16766	Mitochondrial Rho GTPase 2. (606 aa)
	N301_13431	Syntabulin. (641 aa)
	N301_02070	RAS guanyl-releasing protein 1. (776 aa)
	N301_04525	Biogenesis of lysosome-related organelles complex 1 subunit 4. (136 aa)
	N301_09361	Eukaryotic translation elongation factor 1 epsilon-1. (145 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_01439	N301_10495	A0A0A0AT79	A0A099ZY22	Protein bicaudal D 1.	SUN domain-containing protein 1.	0.409
N301_01439	N301_11678	A0A0A0AT79	A0A0A0B3P3	Protein bicaudal D 1.	Actin-related protein 10; Belongs to the actin family.	0.691
N301_01439	N301_16435	A0A0A0AT79	A0A0A0ARM6	Protein bicaudal D 1.	Bicaudal D-related protein 1.	0.414
N301_01439	PAFAH1B1	A0A0A0AT79	A0A0A0A8X2	Protein bicaudal D 1.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	0.786
N301_01792	N301_04108	A0A0A0A2Y4	A0A0A0ADT9	AP-3 complex subunit beta-2.	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.884
N301_01792	N301_08843	A0A0A0A2Y4	A0A0A0AGC6	AP-3 complex subunit beta-2.	AP-3 complex subunit mu-2; Belongs to the adaptor complexes medium subunit family.	0.981
N301_01792	N301_09136	A0A0A0A2Y4	A0A0A0AIB6	AP-3 complex subunit beta-2.	Biogenesis of lysosome-related organelles complex 1 subunit 6.	0.409
N301_01792	N301_10730	A0A0A0A2Y4	A0A0A0AQU4	AP-3 complex subunit beta-2.	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.981
N301_01792	N301_10751	A0A0A0A2Y4	A0A0A0AFA5	AP-3 complex subunit beta-2.	Dysbindin.	0.554
N301_01792	N301_14402	A0A0A0A2Y4	A0A0A0ASQ2	AP-3 complex subunit beta-2.	SNARE-associated protein Snapin.	0.669
N301_02070	N301_08090	A0A0A0ALF0	A0A0A0A2Y5	RAS guanyl-releasing protein 1.	Mitochondrial Rho GTPase 1.	0.439
N301_02070	N301_16766	A0A0A0ALF0	A0A099ZXA7	RAS guanyl-releasing protein 1.	Mitochondrial Rho GTPase 2.	0.439
N301_02461	N301_08090	A0A0A0ATU4	A0A0A0A2Y5	Trafficking kinesin-binding protein 2.	Mitochondrial Rho GTPase 1.	0.825
N301_02461	N301_11678	A0A0A0ATU4	A0A0A0B3P3	Trafficking kinesin-binding protein 2.	Actin-related protein 10; Belongs to the actin family.	0.842
N301_02461	N301_11962	A0A0A0ATU4	A0A0A0A1W5	Trafficking kinesin-binding protein 2.	Trafficking kinesin-binding protein 1.	0.671
N301_02461	N301_16022	A0A0A0ATU4	A0A0A0AVV7	Trafficking kinesin-binding protein 2.	Huntingtin.	0.689
N301_02461	N301_16766	A0A0A0ATU4	A0A099ZXA7	Trafficking kinesin-binding protein 2.	Mitochondrial Rho GTPase 2.	0.822
N301_04108	N301_01792	A0A0A0ADT9	A0A0A0A2Y4	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	AP-3 complex subunit beta-2.	0.884
N301_04108	N301_08843	A0A0A0ADT9	A0A0A0AGC6	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	AP-3 complex subunit mu-2; Belongs to the adaptor complexes medium subunit family.	0.981
N301_04108	N301_09136	A0A0A0ADT9	A0A0A0AIB6	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.	Biogenesis of lysosome-related organelles complex 1 subunit 6.	0.409