STRINGSTRING
N301_06447 N301_06447 N301_16314 N301_16314 PAFAH1B1 PAFAH1B1 N301_16547 N301_16547 N301_08115 N301_08115 N301_07861 N301_07861 N301_11308 N301_11308 N301_08226 N301_08226 N301_04598 N301_04598 N301_01997 N301_01997 N301_06037 N301_06037 N301_02578 N301_02578 N301_03991 N301_03991 N301_16139 N301_16139 N301_01658 N301_01658 N301_10513 N301_10513
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N301_06447Potassium channel subfamily K member 2; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (413 aa)
N301_16314Potassium voltage-gated channel subfamily KQT member 1. (82 aa)
PAFAH1B1Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
N301_16547Gamma-aminobutyric acid receptor subunit alpha-5; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (420 aa)
N301_08115Intraflagellar transport protein 20. (93 aa)
N301_07861Prestin. (733 aa)
N301_11308Protein fantom. (1272 aa)
N301_08226Disintegrin and metalloproteinase domain-containing protein 10. (731 aa)
N301_04598Insulin-like growth factor I. (114 aa)
N301_01997Secreted frizzled-related protein 3. (160 aa)
N301_06037DNA helicase; Belongs to the MCM family. (886 aa)
N301_02578Collagen triple helix repeat-containing protein 1. (194 aa)
N301_03991Potassium voltage-gated channel subfamily KQT member 1; Belongs to the potassium channel family. (384 aa)
N301_16139SLIT and NTRK-like 6. (841 aa)
N301_01658Sine oculis-binding protein. (708 aa)
N301_10513Parvalbumin, thymic CPV3; Belongs to the parvalbumin family. (109 aa)
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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