11 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_05956	WW domain-binding protein 4. (400 aa)
	N301_05675	WD40 repeat-containing protein SMU1. (513 aa)
	N301_12852	Smad nuclear-interacting protein 1. (320 aa)
	N301_01822	Microfibrillar-associated protein 1. (413 aa)
	N301_04300	U5 small nuclear ribonucleoprotein 200 kDa helicase. (124 aa)
	N301_11536	RING finger protein 113A. (320 aa)
	N301_03285	Pre-mRNA-splicing factor 38A. (312 aa)
	N301_12315	Serine/arginine repetitive matrix protein 2. (559 aa)
	N301_07835	Pre-mRNA-splicing factor CWC22. (870 aa)
	N301_15713	Zinc finger matrin-type protein 2. (193 aa)
	N301_01589	RNA-binding motif protein, X-linked 2. (115 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_01589	N301_01822	A0A0A0AY64	A0A0A0AC50	RNA-binding motif protein, X-linked 2.	Microfibrillar-associated protein 1.	0.813
N301_01589	N301_03285	A0A0A0AY64	A0A0A0AG99	RNA-binding motif protein, X-linked 2.	Pre-mRNA-splicing factor 38A.	0.660
N301_01589	N301_04300	A0A0A0AY64	A0A0A0AEJ5	RNA-binding motif protein, X-linked 2.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.984
N301_01589	N301_07835	A0A0A0AY64	A0A0A0AJY8	RNA-binding motif protein, X-linked 2.	Pre-mRNA-splicing factor CWC22.	0.948
N301_01589	N301_11536	A0A0A0AY64	A0A0A0AFT5	RNA-binding motif protein, X-linked 2.	RING finger protein 113A.	0.936
N301_01589	N301_12315	A0A0A0AY64	A0A0A0AGS1	RNA-binding motif protein, X-linked 2.	Serine/arginine repetitive matrix protein 2.	0.950
N301_01589	N301_12852	A0A0A0AY64	A0A0A0A6I0	RNA-binding motif protein, X-linked 2.	Smad nuclear-interacting protein 1.	0.997
N301_01589	N301_15713	A0A0A0AY64	A0A0A0AWC8	RNA-binding motif protein, X-linked 2.	Zinc finger matrin-type protein 2.	0.927
N301_01822	N301_01589	A0A0A0AC50	A0A0A0AY64	Microfibrillar-associated protein 1.	RNA-binding motif protein, X-linked 2.	0.813
N301_01822	N301_03285	A0A0A0AC50	A0A0A0AG99	Microfibrillar-associated protein 1.	Pre-mRNA-splicing factor 38A.	0.997
N301_01822	N301_04300	A0A0A0AC50	A0A0A0AEJ5	Microfibrillar-associated protein 1.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.978
N301_01822	N301_05675	A0A0A0AC50	A0A099ZWS1	Microfibrillar-associated protein 1.	WD40 repeat-containing protein SMU1.	0.980
N301_01822	N301_05956	A0A0A0AC50	A0A0A0AAR0	Microfibrillar-associated protein 1.	WW domain-binding protein 4.	0.908
N301_01822	N301_07835	A0A0A0AC50	A0A0A0AJY8	Microfibrillar-associated protein 1.	Pre-mRNA-splicing factor CWC22.	0.696
N301_01822	N301_12315	A0A0A0AC50	A0A0A0AGS1	Microfibrillar-associated protein 1.	Serine/arginine repetitive matrix protein 2.	0.672
N301_01822	N301_12852	A0A0A0AC50	A0A0A0A6I0	Microfibrillar-associated protein 1.	Smad nuclear-interacting protein 1.	0.902
N301_01822	N301_15713	A0A0A0AC50	A0A0A0AWC8	Microfibrillar-associated protein 1.	Zinc finger matrin-type protein 2.	0.997
N301_03285	N301_01589	A0A0A0AG99	A0A0A0AY64	Pre-mRNA-splicing factor 38A.	RNA-binding motif protein, X-linked 2.	0.660
N301_03285	N301_01822	A0A0A0AG99	A0A0A0AC50	Pre-mRNA-splicing factor 38A.	Microfibrillar-associated protein 1.	0.997
N301_03285	N301_04300	A0A0A0AG99	A0A0A0AEJ5	Pre-mRNA-splicing factor 38A.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.724