51 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_16758	Vacuolar protein sorting-associated protein 16. (696 aa)
	N301_15634	Trafficking protein particle complex subunit 3-like. (158 aa)
	N301_04969	Conserved oligomeric Golgi complex subunit 3. (761 aa)
	N301_14913	Vacuolar protein sorting-associated protein 54. (976 aa)
	N301_13410	Conserved oligomeric Golgi complex subunit 7. (769 aa)
	N301_06315	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (697 aa)
	N301_08658	Conserved oligomeric Golgi complex subunit 8. (470 aa)
	N301_06739	Uncharacterized protein C7orf43. (446 aa)
	N301_13776	Exocyst complex component 3-like. (751 aa)
	N301_04791	DnaJ subfamily C member 28. (307 aa)
	N301_11695	Trafficking protein particle complex subunit 2. (157 aa)
	N301_11819	Exocyst complex component 6B. (502 aa)
	N301_08439	Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family. (546 aa)
	N301_15514	Trafficking protein particle complex subunit 3. (166 aa)
	N301_01009	Vacuolar protein sorting-associated protein 18. (944 aa)
	N301_06515	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (606 aa)
	N301_13688	Sulfotransferase; Belongs to the sulfotransferase 1 family. (169 aa)
	N301_12656	WD repeat-containing protein 88. (249 aa)
	N301_16492	Transforming growth factor-beta receptor-associated protein 1. (864 aa)
	N301_07537	Caprin-2. (1091 aa)
	N301_01816	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family. (529 aa)
	N301_15393	Vacuolar protein sorting-associated protein 53. (804 aa)
	N301_14613	RAD50-interacting protein 1. (775 aa)
	N301_04532	Syntaxin-17. (301 aa)
	N301_04077	Trafficking protein particle complex subunit 13. (401 aa)
	N301_14994	Trafficking protein particle complex subunit 8. (1037 aa)
	N301_12927	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (927 aa)
	N301_13653	Conserved oligomeric Golgi complex subunit 1. (793 aa)
	N301_03820	Neuroblastoma-amplified sequence. (2335 aa)
	N301_04541	Exocyst complex component 3. (745 aa)
	N301_05425	Trafficking protein particle complex subunit 5. (134 aa)
	N301_02084	Syntaxin-binding protein 6. (204 aa)
	N301_02138	Trafficking protein particle complex subunit 6B. (109 aa)
	N301_08559	Vam6/Vps39-like. (849 aa)
	N301_06835	Trafficking protein particle complex subunit 9. (128 aa)
	N301_06831	Trafficking protein particle complex subunit 9. (1044 aa)
	N301_02880	Trafficking protein particle complex subunit 12. (526 aa)
	N301_10619	Exocyst complex component 6. (773 aa)
	N301_05473	Uncharacterized protein. (250 aa)
	N301_00347	Trafficking protein particle complex subunit 2-like. (137 aa)
	N301_07384	Trafficking protein particle complex subunit 10. (244 aa)
	N301_16674	Conserved oligomeric Golgi complex subunit 5. (777 aa)
	N301_05471	Exocyst complex component 3-like 4. (533 aa)
	N301_15204	Conserved oligomeric Golgi complex subunit 2. (717 aa)
	N301_07386	Trafficking protein particle complex subunit 10. (143 aa)
	N301_14280	Sulfotransferase; Belongs to the sulfotransferase 1 family. (169 aa)
	N301_05472	Tumor necrosis factor alpha-induced protein 2. (438 aa)
	N301_07385	Trafficking protein particle complex subunit 10. (223 aa)
	N301_11475	Trafficking protein particle complex subunit 11. (1097 aa)
	N301_13054	RING finger protein 215. (227 aa)
	N301_11672	Exocyst complex component 5. (698 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00347	N301_02138	A0A0A0AUR4	A0A0A0ALS1	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 6B.	0.999
N301_00347	N301_02880	A0A0A0AUR4	A0A0A0AQ21	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 12.	0.990
N301_00347	N301_04077	A0A0A0AUR4	A0A0A0AHX8	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 13.	0.981
N301_00347	N301_05425	A0A0A0AUR4	A0A0A0AK09	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 5.	0.998
N301_00347	N301_06831	A0A0A0AUR4	A0A0A0APM9	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 9.	0.968
N301_00347	N301_06835	A0A0A0AUR4	A0A0A0APF3	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 9.	0.964
N301_00347	N301_07384	A0A0A0AUR4	A0A0A0AUX4	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 10.	0.934
N301_00347	N301_07385	A0A0A0AUR4	A0A0A0AZ15	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 10.	0.934
N301_00347	N301_07386	A0A0A0AUR4	A0A0A0AWL0	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 10.	0.934
N301_00347	N301_11475	A0A0A0AUR4	A0A0A0AZT4	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 11.	0.996
N301_00347	N301_11695	A0A0A0AUR4	A0A0A0A229	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 2.	0.997
N301_00347	N301_14994	A0A0A0AUR4	A0A0A0AIW7	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 8.	0.996
N301_00347	N301_15514	A0A0A0AUR4	A0A0A0A637	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 3.	0.970
N301_00347	N301_15634	A0A0A0AUR4	A0A099ZU63	Trafficking protein particle complex subunit 2-like.	Trafficking protein particle complex subunit 3-like.	0.970
N301_01009	N301_01816	A0A0A0A699	A0A0A0ACS2	Vacuolar protein sorting-associated protein 18.	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.	0.986
N301_01009	N301_04532	A0A0A0A699	A0A0A0AHT6	Vacuolar protein sorting-associated protein 18.	Syntaxin-17.	0.814
N301_01009	N301_08439	A0A0A0A699	A0A0A0A5V1	Vacuolar protein sorting-associated protein 18.	Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.	0.993
N301_01009	N301_08559	A0A0A0A699	A0A0A0AP82	Vacuolar protein sorting-associated protein 18.	Vam6/Vps39-like.	0.998
N301_01009	N301_14913	A0A0A0A699	A0A099ZXF4	Vacuolar protein sorting-associated protein 18.	Vacuolar protein sorting-associated protein 54.	0.499
N301_01009	N301_16492	A0A0A0A699	A0A0A0AAY6	Vacuolar protein sorting-associated protein 18.	Transforming growth factor-beta receptor-associated protein 1.	0.997