77 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_08207	Protein unc-13 C. (2160 aa)
	N301_03363	Tctex1 domain-containing protein 1. (107 aa)
	N301_16705	Hydrocephalus-inducing protein. (5118 aa)
	N301_01622	Coiled-coil domain-containing protein 103. (203 aa)
	N301_12384	Sperm flagellar protein 1. (215 aa)
	N301_03432	WD repeat-containing protein 63. (804 aa)
	N301_16445	Coiled-coil domain-containing protein 42A. (103 aa)
	N301_11382	Kelch-like 17. (602 aa)
	N301_11423	Uncharacterized protein C1orf222. (105 aa)
	N301_05852	Protein inscuteable. (522 aa)
	N301_02893	Regulating synaptic membrane exocytosis protein 3. (239 aa)
	N301_14259	Parkin coregulated gene protein. (270 aa)
	N301_05299	Alpha/beta hydrolase domain-containing protein 13. (337 aa)
	N301_12475	72 kDa inositol polyphosphate 5-phosphatase. (594 aa)
	N301_08336	Nucleoside diphosphate kinase 7; Belongs to the NDK family. (367 aa)
	N301_09626	Serine/threonine-protein kinase Kist. (331 aa)
	N301_04927	EF-hand domain-containing family member C2. (731 aa)
	N301_07019	WD repeat-containing protein 96. (215 aa)
	N301_07018	WD repeat-containing protein 96. (118 aa)
	N301_12242	Coiled-coil domain-containing protein 42A. (235 aa)
	N301_16154	ELKS/Rab6-interacting/CAST family member 1. (861 aa)
	N301_03222	Uncharacterized protein. (346 aa)
	N301_03150	Sperm-associated antigen 17. (159 aa)
	N301_08450	Coiled-coil domain-containing protein 63. (520 aa)
	N301_14170	Uncharacterized protein C1orf158. (212 aa)
	N301_12249	WD repeat-containing protein 16. (594 aa)
	N301_16234	Protein CASC1. (655 aa)
	N301_03220	WD repeat-containing protein 52. (882 aa)
	N301_13515	Armadillo repeat-containing protein 4. (1027 aa)
	N301_09301	WD repeat-containing and planar cell polarity effector protein fritz. (472 aa)
	N301_06766	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (153 aa)
	N301_16286	RIB43A-like with coiled-coils protein 2. (340 aa)
	N301_04807	Superoxide dismutase [Cu-Zn]. (132 aa)
	N301_13513	Sjoegren syndrome nuclear autoantigen 1. (112 aa)
	N301_09060	Regulating synaptic membrane exocytosis protein 1. (234 aa)
	N301_03178	Protein MAATS1. (558 aa)
	N301_01049	Threonine aspartase 1. (417 aa)
	N301_13816	UPF0468 protein C16orf80. (165 aa)
	N301_03049	Tetratricopeptide repeat protein 30A. (527 aa)
	N301_07760	Coiled-coil domain-containing protein 39. (851 aa)
	N301_03096	Coiled-coil domain-containing protein 173. (462 aa)
	N301_04769	Cyclin-dependent kinase-like 5. (894 aa)
	N301_02852	Tetratricopeptide repeat protein 25. (525 aa)
	N301_11809	Dynein light chain 1, axonemal. (179 aa)
	N301_01985	Sperm-associated antigen 16 protein. (222 aa)
	N301_06913	Brefeldin A-inhibited guanine nucleotide-exchange protein 2. (1747 aa)
	N301_00713	Dynein assembly factor 1, axonemal. (252 aa)
	N301_06940	Regulating synaptic membrane exocytosis protein 4. (237 aa)
	N301_07017	WD repeat-containing protein 96. (994 aa)
	N301_01755	Radial spoke head protein 3. (276 aa)
	N301_01621	Ig-like V-type domain-containing protein FAM187A. (404 aa)
	N301_14704	Uncharacterized protein. (1215 aa)
	N301_09010	Retinitis pigmentosa 1-like 1 protein. (217 aa)
	N301_05243	EF-hand domain-containing family member B. (563 aa)
	N301_09212	Dynein intermediate chain 1, axonemal. (584 aa)
	N301_05802	Regulating synaptic membrane exocytosis protein 1. (828 aa)
	N301_11581	Pleckstrin homology-like domain family B member 2. (1254 aa)
	N301_16374	Suppressor of tumorigenicity 7 protein. (505 aa)
	N301_07852	EF-hand domain-containing protein 1. (623 aa)
	N301_09011	Uncharacterized protein. (473 aa)
	N301_09562	Myosin-M heavy chain. (463 aa)
	N301_00778	Suppressor of tumorigenicity 7 protein-like. (478 aa)
	N301_09524	Primary ciliary dyskinesia protein 1. (174 aa)
	N301_01996	Microtubule-associated protein. (505 aa)
	N301_07588	PACRG-like. (228 aa)
	N301_04215	UPF0704 protein C6orf165. (620 aa)
	N301_11424	Uncharacterized protein KIAA1751. (305 aa)
	N301_09195	Protein unc-13 B. (110 aa)
	N301_09561	Uncharacterized protein. (199 aa)
	N301_09112	Protein FAM154B. (440 aa)
	N301_01042	Coiled-coil domain-containing protein 40. (919 aa)
	N301_08206	Protein unc-13 A. (110 aa)
	N301_15696	Microtubule-associated protein. (100 aa)
	N301_03527	G-protein-signaling modulator 2. (643 aa)
	N301_09106	Uncharacterized protein C15orf26. (262 aa)
	N301_15694	Uncharacterized protein. (376 aa)
	N301_10934	Uncharacterized protein C20orf26. (1166 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00713	N301_01042	A0A099ZX83	A0A0A0AL78	Dynein assembly factor 1, axonemal.	Coiled-coil domain-containing protein 40.	0.511
N301_00713	N301_01622	A0A099ZX83	A0A0A0AFH5	Dynein assembly factor 1, axonemal.	Coiled-coil domain-containing protein 103.	0.484
N301_00713	N301_07760	A0A099ZX83	A0A0A0A0S8	Dynein assembly factor 1, axonemal.	Coiled-coil domain-containing protein 39.	0.525
N301_00713	N301_09212	A0A099ZX83	A0A0A0AR59	Dynein assembly factor 1, axonemal.	Dynein intermediate chain 1, axonemal.	0.674
N301_01042	N301_00713	A0A0A0AL78	A0A099ZX83	Coiled-coil domain-containing protein 40.	Dynein assembly factor 1, axonemal.	0.511
N301_01042	N301_01622	A0A0A0AL78	A0A0A0AFH5	Coiled-coil domain-containing protein 40.	Coiled-coil domain-containing protein 103.	0.470
N301_01042	N301_01755	A0A0A0AL78	A0A0A0AC53	Coiled-coil domain-containing protein 40.	Radial spoke head protein 3.	0.474
N301_01042	N301_07760	A0A0A0AL78	A0A0A0A0S8	Coiled-coil domain-containing protein 40.	Coiled-coil domain-containing protein 39.	0.712
N301_01042	N301_08450	A0A0A0AL78	A0A0A0A673	Coiled-coil domain-containing protein 40.	Coiled-coil domain-containing protein 63.	0.758
N301_01042	N301_09212	A0A0A0AL78	A0A0A0AR59	Coiled-coil domain-containing protein 40.	Dynein intermediate chain 1, axonemal.	0.436
N301_01042	N301_13515	A0A0A0AL78	A0A0A0A4W4	Coiled-coil domain-containing protein 40.	Armadillo repeat-containing protein 4.	0.626
N301_01042	N301_16286	A0A0A0AL78	A0A0A0A4R9	Coiled-coil domain-containing protein 40.	RIB43A-like with coiled-coils protein 2.	0.535
N301_01622	N301_00713	A0A0A0AFH5	A0A099ZX83	Coiled-coil domain-containing protein 103.	Dynein assembly factor 1, axonemal.	0.484
N301_01622	N301_01042	A0A0A0AFH5	A0A0A0AL78	Coiled-coil domain-containing protein 103.	Coiled-coil domain-containing protein 40.	0.470
N301_01622	N301_07760	A0A0A0AFH5	A0A0A0A0S8	Coiled-coil domain-containing protein 103.	Coiled-coil domain-containing protein 39.	0.483
N301_01622	N301_09212	A0A0A0AFH5	A0A0A0AR59	Coiled-coil domain-containing protein 103.	Dynein intermediate chain 1, axonemal.	0.480
N301_01755	N301_01042	A0A0A0AC53	A0A0A0AL78	Radial spoke head protein 3.	Coiled-coil domain-containing protein 40.	0.474
N301_01755	N301_07760	A0A0A0AC53	A0A0A0A0S8	Radial spoke head protein 3.	Coiled-coil domain-containing protein 39.	0.436
N301_01755	N301_07852	A0A0A0AC53	A0A0A0API5	Radial spoke head protein 3.	EF-hand domain-containing protein 1.	0.455
N301_01755	N301_08336	A0A0A0AC53	A0A0A0AZK0	Radial spoke head protein 3.	Nucleoside diphosphate kinase 7; Belongs to the NDK family.	0.406