9 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_04336	Transmembrane gamma-carboxyglutamic acid protein 4. (223 aa)
	N301_15974	Matrix Gla protein. (101 aa)
	N301_15973	Gla domain-containing protein. (71 aa)
	N301_00981	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family. (609 aa)
	N301_11215	Coagulation factor IX. (418 aa)
	N301_11594	Vitamin K-dependent protein S. (638 aa)
	N301_05279	Coagulation factor VII. (402 aa)
	N301_14429	Transmembrane gamma-carboxyglutamic acid protein 3. (215 aa)
	N301_05264	Growth arrest-specific protein 6. (629 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00981	N301_05279	A0A0A0A518	A0A0A0AWS0	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Coagulation factor VII.	0.848
N301_00981	N301_11215	A0A0A0A518	A0A0A0A988	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Coagulation factor IX.	0.845
N301_05279	N301_00981	A0A0A0AWS0	A0A0A0A518	Coagulation factor VII.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.848
N301_05279	N301_11215	A0A0A0AWS0	A0A0A0A988	Coagulation factor VII.	Coagulation factor IX.	0.587
N301_05279	N301_11594	A0A0A0AWS0	A0A0A0ANP3	Coagulation factor VII.	Vitamin K-dependent protein S.	0.468
N301_11215	N301_00981	A0A0A0A988	A0A0A0A518	Coagulation factor IX.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.845
N301_11215	N301_05279	A0A0A0A988	A0A0A0AWS0	Coagulation factor IX.	Coagulation factor VII.	0.587
N301_11215	N301_11594	A0A0A0A988	A0A0A0ANP3	Coagulation factor IX.	Vitamin K-dependent protein S.	0.468
N301_11594	N301_05279	A0A0A0ANP3	A0A0A0AWS0	Vitamin K-dependent protein S.	Coagulation factor VII.	0.468
N301_11594	N301_11215	A0A0A0ANP3	A0A0A0A988	Vitamin K-dependent protein S.	Coagulation factor IX.	0.468
N301_11594	N301_15974	A0A0A0ANP3	A0A0A0A0B4	Vitamin K-dependent protein S.	Matrix Gla protein.	0.476
N301_15974	N301_11594	A0A0A0A0B4	A0A0A0ANP3	Matrix Gla protein.	Vitamin K-dependent protein S.	0.476