25 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_08392	Nuclear receptor corepressor 2. (749 aa)
	N301_00689	F-box-like/WD repeat-containing protein TBL1X. (499 aa)
	N301_02200	SNW domain-containing protein 1. (538 aa)
	N301_06496	Histone deacetylase 9. (1054 aa)
	N301_13283	CREB-binding protein. (2391 aa)
	N301_00090	Mastermind-like 2. (195 aa)
	N301_15643	Histone deacetylase 3. (417 aa)
	N301_00088	Mastermind-like 2. (471 aa)
	N301_15689	Histone deacetylase 8. (343 aa)
	N301_10423	Histone deacetylase 10. (343 aa)
	N301_02531	Histone deacetylase 1. (439 aa)
	N301_03540	Protein crumbs 1. (1382 aa)
	N301_12472	Neurogenic locus notch protein. (517 aa)
	N301_08967	Histone deacetylase 2. (477 aa)
	N301_12517	Protein crumbs 1. (1326 aa)
	N301_12473	Neurogenic locus notch protein 1. (368 aa)
	N301_04672	Mastermind-like 3. (941 aa)
	N301_14445	Mastermind-like domain-containing protein 1. (975 aa)
	N301_14204	Histone deacetylase 11. (353 aa)
	N301_07604	Suppressor of hairless protein. (468 aa)
	N301_05246	Histone acetyltransferase KAT2B. (731 aa)
	N301_08041	Recombining binding protein suppressor of hairless-like. (423 aa)
	N301_09035	Histone deacetylase 4. (1074 aa)
	N301_02846	Histone acetyltransferase KAT2A. (487 aa)
	N301_07773	F-box-like/WD repeat-containing protein TBL1XR1. (506 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00088	N301_00090	A0A0A0AB09	A0A0A0A897	Mastermind-like 2.	Mastermind-like 2.	0.405
N301_00088	N301_02200	A0A0A0AB09	A0A0A0ALS3	Mastermind-like 2.	SNW domain-containing protein 1.	0.593
N301_00088	N301_02846	A0A0A0AB09	A0A099ZZ02	Mastermind-like 2.	Histone acetyltransferase KAT2A.	0.751
N301_00088	N301_03540	A0A0A0AB09	A0A0A0AJG1	Mastermind-like 2.	Protein crumbs 1.	0.417
N301_00088	N301_04672	A0A0A0AB09	A0A0A0AYK2	Mastermind-like 2.	Mastermind-like 3.	0.776
N301_00088	N301_05246	A0A0A0AB09	A0A0A0APF7	Mastermind-like 2.	Histone acetyltransferase KAT2B.	0.759
N301_00088	N301_07604	A0A0A0AB09	A0A0A0API3	Mastermind-like 2.	Suppressor of hairless protein.	0.892
N301_00088	N301_08041	A0A0A0AB09	A0A099ZVT5	Mastermind-like 2.	Recombining binding protein suppressor of hairless-like.	0.873
N301_00088	N301_12472	A0A0A0AB09	A0A0A0B124	Mastermind-like 2.	Neurogenic locus notch protein.	0.762
N301_00088	N301_12473	A0A0A0AB09	A0A0A0AYS4	Mastermind-like 2.	Neurogenic locus notch protein 1.	0.762
N301_00088	N301_12517	A0A0A0AB09	A0A0A0AYY6	Mastermind-like 2.	Protein crumbs 1.	0.417
N301_00088	N301_13283	A0A0A0AB09	A0A0A0A874	Mastermind-like 2.	CREB-binding protein.	0.813
N301_00088	N301_14445	A0A0A0AB09	A0A0A0AUB9	Mastermind-like 2.	Mastermind-like domain-containing protein 1.	0.506
N301_00090	N301_00088	A0A0A0A897	A0A0A0AB09	Mastermind-like 2.	Mastermind-like 2.	0.405
N301_00090	N301_02200	A0A0A0A897	A0A0A0ALS3	Mastermind-like 2.	SNW domain-containing protein 1.	0.593
N301_00090	N301_02846	A0A0A0A897	A0A099ZZ02	Mastermind-like 2.	Histone acetyltransferase KAT2A.	0.751
N301_00090	N301_03540	A0A0A0A897	A0A0A0AJG1	Mastermind-like 2.	Protein crumbs 1.	0.417
N301_00090	N301_04672	A0A0A0A897	A0A0A0AYK2	Mastermind-like 2.	Mastermind-like 3.	0.776
N301_00090	N301_05246	A0A0A0A897	A0A0A0APF7	Mastermind-like 2.	Histone acetyltransferase KAT2B.	0.759
N301_00090	N301_07604	A0A0A0A897	A0A0A0API3	Mastermind-like 2.	Suppressor of hairless protein.	0.892