51 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_15010	Tumor suppressor p53-binding protein 1. (1827 aa)
	N301_16741	Histone H2B; Belongs to the histone H2B family. (98 aa)
	N301_11816	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (418 aa)
	N301_15952	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	N301_15957	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_09246	DNA repair protein RAD50. (1312 aa)
	N301_00629	BRCA1-A complex subunit RAP80. (607 aa)
	N301_06019	KxDL motif-containing protein 1. (176 aa)
	N301_06918	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (534 aa)
	N301_07257	Lysine-specific demethylase 4B. (1118 aa)
	N301_14627	Uncharacterized protein. (110 aa)
	N301_04952	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5. (960 aa)
	N301_00239	Uncharacterized protein. (110 aa)
	N301_15961	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_15946	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_14790	RNA-directed DNA polymerase from mobile element jockey. (116 aa)
	N301_15963	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_04864	Ankyrin repeat domain-containing protein 12. (1916 aa)
	N301_08389	Polyubiquitin-C. (228 aa)
	N301_03776	Uncharacterized protein. (110 aa)
	N301_13740	E3 ubiquitin-protein ligase RNF8. (225 aa)
	N301_15626	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (587 aa)
	N301_13741	E3 ubiquitin-protein ligase RNF8. (136 aa)
	N301_00100	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family. (700 aa)
	N301_04476	BRCA1-A complex subunit BRE. (363 aa)
	N301_05515	Ubiquitin-conjugating enzyme E2 variant 2. (138 aa)
	N301_00118	Uncharacterized protein. (49 aa)
	N301_10460	Uncharacterized protein. (110 aa)
	N301_09071	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_15418	Polyubiquitin-B. (229 aa)
	N301_03381	Lysine-specific demethylase 4A. (954 aa)
	N301_01632	E3 ubiquitin-protein ligase RNF168. (572 aa)
	N301_10958	Ubiquitin-40S ribosomal protein S27a. (140 aa)
	N301_04126	Putative ankyrin repeat domain-containing protein 31. (723 aa)
	N301_13424	SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (162 aa)
	N301_01867	Amyloid beta A4 protein-binding family B member 2. (685 aa)
	N301_04674	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_05310	Tyrosine-protein kinase. (1099 aa)
	N301_01983	BRCA1-associated RING domain protein 1. (722 aa)
	N301_03695	Serine/threonine-protein kinase Chk2. (464 aa)
	N301_13892	Tyrosine-protein kinase BAZ1B. (1451 aa)
	N301_08940	Ankyrin repeat domain-containing protein 11. (1093 aa)
	N301_03950	BRCA1-A complex subunit Abraxas. (376 aa)
	N301_05878	E3 SUMO-protein ligase PIAS4. (486 aa)
	N301_02470	Small ubiquitin-related modifier. (102 aa)
	N301_08939	Ankyrin repeat domain-containing protein 11. (781 aa)
	N301_15047	Ubiquitin carboxyl-terminal hydrolase BAP1. (691 aa)
	N301_11907	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (497 aa)
	N301_16013	RNA-directed DNA polymerase from mobile element jockey. (108 aa)
	N301_11015	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (563 aa)
	N301_16129	RNA-directed DNA polymerase from mobile element jockey. (125 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00100	N301_00118	A0A0A0A8A6	A0A0A0AB37	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Uncharacterized protein.	0.650
N301_00100	N301_00239	A0A0A0A8A6	A0A0A0A226	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Uncharacterized protein.	0.650
N301_00100	N301_00629	A0A0A0A8A6	A0A099ZZK4	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	BRCA1-A complex subunit RAP80.	0.728
N301_00100	N301_01632	A0A0A0A8A6	A0A0A0AGH8	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	E3 ubiquitin-protein ligase RNF168.	0.781
N301_00100	N301_01867	A0A0A0A8A6	A0A0A0AIC3	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Amyloid beta A4 protein-binding family B member 2.	0.720
N301_00100	N301_01983	A0A0A0A8A6	A0A0A0ALM5	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	BRCA1-associated RING domain protein 1.	0.997
N301_00100	N301_02470	A0A0A0A8A6	A0A0A0AU49	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Small ubiquitin-related modifier.	0.854
N301_00100	N301_03695	A0A0A0A8A6	A0A0A0AR60	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Serine/threonine-protein kinase Chk2.	0.803
N301_00100	N301_03776	A0A0A0A8A6	A0A0A0A616	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Uncharacterized protein.	0.650
N301_00100	N301_03950	A0A0A0A8A6	A0A0A0ATI1	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	BRCA1-A complex subunit Abraxas.	0.678
N301_00100	N301_04126	A0A0A0A8A6	A0A0A0AI26	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Putative ankyrin repeat domain-containing protein 31.	0.830
N301_00100	N301_04476	A0A0A0A8A6	A0A0A0A8A8	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	BRCA1-A complex subunit BRE.	0.629
N301_00100	N301_04674	A0A0A0A8A6	A0A0A0AK38	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Histone H2B; Belongs to the histone H2B family.	0.560
N301_00100	N301_04864	A0A0A0A8A6	A0A0A0A3H5	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Ankyrin repeat domain-containing protein 12.	0.830
N301_00100	N301_04952	A0A0A0A8A6	A0A0A0A1L2	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.	0.494
N301_00100	N301_05310	A0A0A0A8A6	A0A0A0AL44	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Tyrosine-protein kinase.	0.626
N301_00100	N301_05515	A0A0A0A8A6	A0A0A0AAX9	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Ubiquitin-conjugating enzyme E2 variant 2.	0.820
N301_00100	N301_05878	A0A0A0A8A6	A0A0A0ATU9	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	E3 SUMO-protein ligase PIAS4.	0.680
N301_00100	N301_08389	A0A0A0A8A6	A0A0A0A481	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Polyubiquitin-C.	0.700
N301_00100	N301_08939	A0A0A0A8A6	A0A0A0AVG5	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Ankyrin repeat domain-containing protein 11.	0.830