48 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_04864	Ankyrin repeat domain-containing protein 12. (1916 aa)
	N301_00239	Uncharacterized protein. (110 aa)
	N301_14627	Uncharacterized protein. (110 aa)
	N301_00303	Protein CNPPD1. (194 aa)
	N301_14659	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (491 aa)
	N301_00629	BRCA1-A complex subunit RAP80. (607 aa)
	N301_09246	DNA repair protein RAD50. (1312 aa)
	N301_15957	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_15952	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	N301_16741	Histone H2B; Belongs to the histone H2B family. (98 aa)
	N301_15010	Tumor suppressor p53-binding protein 1. (1827 aa)
	N301_00301	Non-homologous end-joining factor 1. (192 aa)
	N301_15961	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_15946	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_14790	RNA-directed DNA polymerase from mobile element jockey. (116 aa)
	N301_15963	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_05919	X-ray repair cross-complementing protein 5. (598 aa)
	N301_03776	Uncharacterized protein. (110 aa)
	N301_13740	E3 ubiquitin-protein ligase RNF8. (225 aa)
	N301_11183	Transmembrane protein 182. (240 aa)
	N301_13741	E3 ubiquitin-protein ligase RNF8. (136 aa)
	N301_00100	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family. (700 aa)
	N301_04476	BRCA1-A complex subunit BRE. (363 aa)
	N301_05513	DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family. (4094 aa)
	N301_05515	Ubiquitin-conjugating enzyme E2 variant 2. (138 aa)
	N301_00118	Uncharacterized protein. (49 aa)
	N301_10460	Uncharacterized protein. (110 aa)
	N301_07915	Protein artemis. (660 aa)
	N301_09071	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_01632	E3 ubiquitin-protein ligase RNF168. (572 aa)
	N301_10582	Telomere-associated protein RIF1. (2280 aa)
	N301_04515	Tyrosyl-DNA phosphodiesterase 2. (306 aa)
	N301_04126	Putative ankyrin repeat domain-containing protein 31. (723 aa)
	N301_08872	Tyrosyl-DNA phosphodiesterase 1. (607 aa)
	N301_04674	Histone H2B; Belongs to the histone H2B family. (126 aa)
	N301_01983	BRCA1-associated RING domain protein 1. (722 aa)
	N301_09588	X-ray repair cross-complementing protein 5. (697 aa)
	N301_05978	PAX-interacting protein 1. (1036 aa)
	N301_05757	DNA repair protein XRCC4. (288 aa)
	N301_08940	Ankyrin repeat domain-containing protein 11. (1093 aa)
	N301_10607	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator. (505 aa)
	N301_03950	BRCA1-A complex subunit Abraxas. (376 aa)
	N301_05878	E3 SUMO-protein ligase PIAS4. (486 aa)
	N301_08939	Ankyrin repeat domain-containing protein 11. (781 aa)
	N301_11907	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (497 aa)
	N301_16013	RNA-directed DNA polymerase from mobile element jockey. (108 aa)
	N301_05300	DNA ligase. (912 aa)
	N301_16129	RNA-directed DNA polymerase from mobile element jockey. (125 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00100	N301_00118	A0A0A0A8A6	A0A0A0AB37	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Uncharacterized protein.	0.650
N301_00100	N301_00239	A0A0A0A8A6	A0A0A0A226	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Uncharacterized protein.	0.650
N301_00100	N301_00629	A0A0A0A8A6	A0A099ZZK4	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	BRCA1-A complex subunit RAP80.	0.728
N301_00100	N301_01632	A0A0A0A8A6	A0A0A0AGH8	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	E3 ubiquitin-protein ligase RNF168.	0.781
N301_00100	N301_01983	A0A0A0A8A6	A0A0A0ALM5	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	BRCA1-associated RING domain protein 1.	0.997
N301_00100	N301_03776	A0A0A0A8A6	A0A0A0A616	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Uncharacterized protein.	0.650
N301_00100	N301_03950	A0A0A0A8A6	A0A0A0ATI1	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	BRCA1-A complex subunit Abraxas.	0.678
N301_00100	N301_04126	A0A0A0A8A6	A0A0A0AI26	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Putative ankyrin repeat domain-containing protein 31.	0.830
N301_00100	N301_04476	A0A0A0A8A6	A0A0A0A8A8	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	BRCA1-A complex subunit BRE.	0.629
N301_00100	N301_04674	A0A0A0A8A6	A0A0A0AK38	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Histone H2B; Belongs to the histone H2B family.	0.560
N301_00100	N301_04864	A0A0A0A8A6	A0A0A0A3H5	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Ankyrin repeat domain-containing protein 12.	0.830
N301_00100	N301_05300	A0A0A0A8A6	A0A0A0AYL7	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	DNA ligase.	0.863
N301_00100	N301_05513	A0A0A0A8A6	A0A0A0A9E0	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.	0.800
N301_00100	N301_05515	A0A0A0A8A6	A0A0A0AAX9	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Ubiquitin-conjugating enzyme E2 variant 2.	0.820
N301_00100	N301_05878	A0A0A0A8A6	A0A0A0ATU9	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	E3 SUMO-protein ligase PIAS4.	0.680
N301_00100	N301_05919	A0A0A0A8A6	A0A0A0A425	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	X-ray repair cross-complementing protein 5.	0.985
N301_00100	N301_05978	A0A0A0A8A6	A0A0A0ANV4	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	PAX-interacting protein 1.	0.912
N301_00100	N301_07915	A0A0A0A8A6	A0A0A0ACJ5	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Protein artemis.	0.797
N301_00100	N301_08872	A0A0A0A8A6	A0A0A0AJW9	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Tyrosyl-DNA phosphodiesterase 1.	0.500
N301_00100	N301_08939	A0A0A0A8A6	A0A0A0AVG5	Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.	Ankyrin repeat domain-containing protein 11.	0.830