STRINGSTRING
N301_04864 N301_04864 N301_00239 N301_00239 N301_14627 N301_14627 N301_00303 N301_00303 N301_14659 N301_14659 N301_00629 N301_00629 N301_09246 N301_09246 N301_15957 N301_15957 N301_15952 N301_15952 N301_16741 N301_16741 N301_15010 N301_15010 N301_00301 N301_00301 N301_15961 N301_15961 N301_15946 N301_15946 N301_14790 N301_14790 N301_15963 N301_15963 N301_05919 N301_05919 N301_03776 N301_03776 N301_13740 N301_13740 N301_11183 N301_11183 N301_13741 N301_13741 N301_00100 N301_00100 N301_04476 N301_04476 N301_05513 N301_05513 N301_05515 N301_05515 N301_00118 N301_00118 N301_10460 N301_10460 N301_07915 N301_07915 N301_09071 N301_09071 N301_01632 N301_01632 N301_10582 N301_10582 N301_04515 N301_04515 N301_04126 N301_04126 N301_08872 N301_08872 N301_04674 N301_04674 N301_01983 N301_01983 N301_09588 N301_09588 N301_05978 N301_05978 N301_05757 N301_05757 N301_08940 N301_08940 N301_10607 N301_10607 N301_03950 N301_03950 N301_05878 N301_05878 N301_08939 N301_08939 N301_11907 N301_11907 N301_16013 N301_16013 N301_05300 N301_05300 N301_16129 N301_16129
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N301_04864Ankyrin repeat domain-containing protein 12. (1916 aa)
N301_00239Uncharacterized protein. (110 aa)
N301_14627Uncharacterized protein. (110 aa)
N301_00303Protein CNPPD1. (194 aa)
N301_14659DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (491 aa)
N301_00629BRCA1-A complex subunit RAP80. (607 aa)
N301_09246DNA repair protein RAD50. (1312 aa)
N301_15957Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_15952Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
N301_16741Histone H2B; Belongs to the histone H2B family. (98 aa)
N301_15010Tumor suppressor p53-binding protein 1. (1827 aa)
N301_00301Non-homologous end-joining factor 1. (192 aa)
N301_15961Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_15946Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_14790RNA-directed DNA polymerase from mobile element jockey. (116 aa)
N301_15963Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_05919X-ray repair cross-complementing protein 5. (598 aa)
N301_03776Uncharacterized protein. (110 aa)
N301_13740E3 ubiquitin-protein ligase RNF8. (225 aa)
N301_11183Transmembrane protein 182. (240 aa)
N301_13741E3 ubiquitin-protein ligase RNF8. (136 aa)
N301_00100Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family. (700 aa)
N301_04476BRCA1-A complex subunit BRE. (363 aa)
N301_05513DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family. (4094 aa)
N301_05515Ubiquitin-conjugating enzyme E2 variant 2. (138 aa)
N301_00118Uncharacterized protein. (49 aa)
N301_10460Uncharacterized protein. (110 aa)
N301_07915Protein artemis. (660 aa)
N301_09071Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_01632E3 ubiquitin-protein ligase RNF168. (572 aa)
N301_10582Telomere-associated protein RIF1. (2280 aa)
N301_04515Tyrosyl-DNA phosphodiesterase 2. (306 aa)
N301_04126Putative ankyrin repeat domain-containing protein 31. (723 aa)
N301_08872Tyrosyl-DNA phosphodiesterase 1. (607 aa)
N301_04674Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_01983BRCA1-associated RING domain protein 1. (722 aa)
N301_09588X-ray repair cross-complementing protein 5. (697 aa)
N301_05978PAX-interacting protein 1. (1036 aa)
N301_05757DNA repair protein XRCC4. (288 aa)
N301_08940Ankyrin repeat domain-containing protein 11. (1093 aa)
N301_10607DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator. (505 aa)
N301_03950BRCA1-A complex subunit Abraxas. (376 aa)
N301_05878E3 SUMO-protein ligase PIAS4. (486 aa)
N301_08939Ankyrin repeat domain-containing protein 11. (781 aa)
N301_11907Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (497 aa)
N301_16013RNA-directed DNA polymerase from mobile element jockey. (108 aa)
N301_05300DNA ligase. (912 aa)
N301_16129RNA-directed DNA polymerase from mobile element jockey. (125 aa)
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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