STRINGSTRING
N301_13740 N301_13740 N301_13824 N301_13824 N301_04674 N301_04674 N301_05780 N301_05780 N301_01983 N301_01983 N301_10817 N301_10817 N301_01348 N301_01348 N301_15487 N301_15487 N301_06708 N301_06708 N301_02994 N301_02994 N301_03010 N301_03010 N301_08940 N301_08940 N301_03950 N301_03950 N301_05878 N301_05878 N301_08939 N301_08939 N301_11907 N301_11907 N301_10272 N301_10272 N301_16013 N301_16013 N301_11018 N301_11018 N301_16129 N301_16129 N301_07662 N301_07662 N301_10460 N301_10460 N301_15371 N301_15371 N301_00118 N301_00118 N301_05515 N301_05515 N301_06549 N301_06549 N301_04476 N301_04476 N301_00100 N301_00100 N301_13741 N301_13741 N301_04778 N301_04778 N301_08445 N301_08445 N301_03776 N301_03776 N301_07702 N301_07702 N301_04864 N301_04864 N301_15963 N301_15963 N301_10902 N301_10902 N301_12809 N301_12809 N301_11491 N301_11491 N301_14790 N301_14790 N301_15946 N301_15946 N301_15961 N301_15961 N301_00246 N301_00246 N301_00239 N301_00239 N301_11940 N301_11940 N301_14627 N301_14627 N301_13559 N301_13559 N301_04369 N301_04369 N301_07749 N301_07749 N301_14067 N301_14067 N301_00629 N301_00629 N301_09246 N301_09246 N301_15957 N301_15957 N301_15952 N301_15952 N301_16741 N301_16741 N301_15010 N301_15010 N301_06319 N301_06319 N301_04556 N301_04556 N301_13424 N301_13424 N301_09071 N301_09071 N301_08141 N301_08141 N301_01632 N301_01632 N301_14942 N301_14942 N301_04126 N301_04126 N301_12366 N301_12366 N301_05205 N301_05205 N301_12279 N301_12279 N301_01772 N301_01772
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N301_13740E3 ubiquitin-protein ligase RNF8. (225 aa)
N301_13824Uncharacterized protein. (1287 aa)
N301_04674Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_05780Cell cycle checkpoint protein RAD17. (680 aa)
N301_01983BRCA1-associated RING domain protein 1. (722 aa)
N301_10817DNA endonuclease RBBP8. (908 aa)
N301_01348RecQ-mediated genome instability protein 2. (49 aa)
N301_15487Cyclin-A2; Belongs to the cyclin family. (304 aa)
N301_06708DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (998 aa)
N301_02994Replication factor C subunit 3. (327 aa)
N301_03010Cyclin-A1; Belongs to the cyclin family. (364 aa)
N301_08940Ankyrin repeat domain-containing protein 11. (1093 aa)
N301_03950BRCA1-A complex subunit Abraxas. (376 aa)
N301_05878E3 SUMO-protein ligase PIAS4. (486 aa)
N301_08939Ankyrin repeat domain-containing protein 11. (781 aa)
N301_11907Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (497 aa)
N301_10272RecQ-mediated genome instability protein 1. (627 aa)
N301_16013RNA-directed DNA polymerase from mobile element jockey. (108 aa)
N301_11018Replication protein A 32 kDa subunit. (232 aa)
N301_16129RNA-directed DNA polymerase from mobile element jockey. (125 aa)
N301_07662Exonuclease 1. (802 aa)
N301_10460Uncharacterized protein. (110 aa)
N301_15371Fanconi anemia group J protein. (1261 aa)
N301_00118Uncharacterized protein. (49 aa)
N301_05515Ubiquitin-conjugating enzyme E2 variant 2. (138 aa)
N301_06549RCC1 and BTB domain-containing protein 1. (531 aa)
N301_04476BRCA1-A complex subunit BRE. (363 aa)
N301_00100Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family. (700 aa)
N301_13741E3 ubiquitin-protein ligase RNF8. (136 aa)
N301_04778NAD-dependent protein deacetylase sirtuin-6. (336 aa)
N301_08445Cell cycle checkpoint control protein RAD9B. (401 aa)
N301_03776Uncharacterized protein. (110 aa)
N301_07702Replication protein A 14 kDa subunit. (82 aa)
N301_04864Ankyrin repeat domain-containing protein 12. (1916 aa)
N301_15963Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_10902Cell cycle checkpoint protein RAD1. (219 aa)
N301_12809RAD9, HUS1, RAD1-interacting nuclear orphan protein 1. (243 aa)
N301_11491RCC1 and BTB domain-containing protein 2. (531 aa)
N301_14790RNA-directed DNA polymerase from mobile element jockey. (116 aa)
N301_15946Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_15961Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_00246Checkpoint protein HUS1. (266 aa)
N301_00239Uncharacterized protein. (110 aa)
N301_11940DNA topoisomerase 2-binding protein 1. (504 aa)
N301_14627Uncharacterized protein. (110 aa)
N301_13559DNA replication ATP-dependent helicase/nuclease DNA2. (1004 aa)
N301_04369TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (282 aa)
N301_07749Replication factor C subunit 4. (362 aa)
N301_14067Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family. (2667 aa)
N301_00629BRCA1-A complex subunit RAP80. (607 aa)
N301_09246DNA repair protein RAD50. (1312 aa)
N301_15957Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_15952Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
N301_16741Histone H2B; Belongs to the histone H2B family. (98 aa)
N301_15010Tumor suppressor p53-binding protein 1. (1827 aa)
N301_06319Cyclin-dependent kinase 3; Belongs to the protein kinase superfamily. (307 aa)
N301_04556Cell cycle checkpoint control protein RAD9A. (160 aa)
N301_13424SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (162 aa)
N301_09071Histone H2B; Belongs to the histone H2B family. (126 aa)
N301_08141Serine/threonine-protein phosphatase 4 regulatory subunit 2. (395 aa)
N301_01632E3 ubiquitin-protein ligase RNF168. (572 aa)
N301_14942Ankyrin repeat domain-containing protein 32. (215 aa)
N301_04126Putative ankyrin repeat domain-containing protein 31. (723 aa)
N301_12366Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (602 aa)
N301_05205Werner syndrome ATP-dependent helicase. (1364 aa)
N301_12279Replication factor C subunit 2. (316 aa)
N301_01772Replication factor C subunit 5. (284 aa)
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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