STRINGSTRING
N301_10817 N301_10817 N301_01983 N301_01983 N301_11907 N301_11907 N301_08939 N301_08939 N301_01348 N301_01348 N301_08940 N301_08940 N301_06708 N301_06708 N301_05971 N301_05971 N301_07662 N301_07662 N301_00449 N301_00449 N301_10272 N301_10272 N301_09246 N301_09246 N301_13559 N301_13559 N301_04864 N301_04864 N301_06759 N301_06759 N301_13824 N301_13824 N301_00100 N301_00100 N301_15388 N301_15388 N301_15371 N301_15371 N301_08609 N301_08609 N301_08602 N301_08602 N301_08605 N301_08605 N301_04126 N301_04126 N301_05205 N301_05205 N301_07135 N301_07135
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N301_10817DNA endonuclease RBBP8. (908 aa)
N301_01983BRCA1-associated RING domain protein 1. (722 aa)
N301_11907Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (497 aa)
N301_08939Ankyrin repeat domain-containing protein 11. (781 aa)
N301_01348RecQ-mediated genome instability protein 2. (49 aa)
N301_08940Ankyrin repeat domain-containing protein 11. (1093 aa)
N301_06708DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (998 aa)
N301_05971DNA repair protein XRCC2. (266 aa)
N301_07662Exonuclease 1. (802 aa)
N301_00449DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
N301_10272RecQ-mediated genome instability protein 1. (627 aa)
N301_09246DNA repair protein RAD50. (1312 aa)
N301_13559DNA replication ATP-dependent helicase/nuclease DNA2. (1004 aa)
N301_04864Ankyrin repeat domain-containing protein 12. (1916 aa)
N301_06759RNA-directed DNA polymerase from mobile element jockey. (110 aa)
N301_13824Uncharacterized protein. (1287 aa)
N301_00100Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family. (700 aa)
N301_15388DNA repair protein RAD51 3. (327 aa)
N301_15371Fanconi anemia group J protein. (1261 aa)
N301_08609Exonuclease 3'-5' domain-containing protein 2. (621 aa)
N301_08602DNA repair protein RAD51 2. (253 aa)
N301_08605Uncharacterized protein. (41 aa)
N301_04126Putative ankyrin repeat domain-containing protein 31. (723 aa)
N301_05205Werner syndrome ATP-dependent helicase. (1364 aa)
N301_07135Tudor domain-containing protein 3. (726 aa)
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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