STRINGSTRING
N301_05415 N301_05415 N301_14366 N301_14366 N301_01431 N301_01431 N301_03489 N301_03489 N301_03759 N301_03759 N301_12360 N301_12360 N301_12306 N301_12306 N301_01430 N301_01430 N301_03515 N301_03515 N301_04081 N301_04081 N301_12315 N301_12315 N301_12310 N301_12310 N301_03285 N301_03285 N301_01063 N301_01063 N301_05106 N301_05106 N301_11536 N301_11536 N301_03274 N301_03274 LSM8 LSM8 N301_04074 N301_04074 N301_01062 N301_01062 N301_04300 N301_04300 N301_00374 N301_00374 N301_14856 N301_14856 N301_10588 N301_10588 N301_05199 N301_05199 N301_01107 N301_01107 N301_01623 N301_01623 N301_14896 N301_14896 N301_11219 N301_11219 N301_01822 N301_01822 N301_07028 N301_07028 N301_07920 N301_07920 N301_16709 N301_16709 N301_05956 N301_05956 N301_07954 N301_07954 N301_13616 N301_13616 N301_13264 N301_13264 N301_10183 N301_10183 N301_00096 N301_00096 N301_01828 N301_01828 N301_01367 N301_01367 N301_11258 N301_11258 N301_02003 N301_02003 N301_12229 N301_12229 N301_15900 N301_15900 N301_13087 N301_13087 N301_08403 N301_08403 N301_01309 N301_01309 N301_01395 N301_01395 N301_12859 N301_12859 N301_11223 N301_11223 N301_12657 N301_12657 N301_06471 N301_06471 N301_12852 N301_12852 N301_13716 N301_13716 N301_09484 N301_09484 N301_12079 N301_12079 N301_03725 N301_03725 N301_07778 N301_07778 N301_07251 N301_07251 N301_14598 N301_14598 N301_14565 N301_14565 N301_11111 N301_11111 N301_15244 N301_15244 N301_10876 N301_10876 N301_11947 N301_11947 N301_04800 N301_04800 N301_05798 N301_05798 N301_05897 N301_05897 N301_13801 N301_13801 N301_03720 N301_03720 N301_05922 N301_05922 N301_07245 N301_07245 N301_14649 N301_14649 N301_11912 N301_11912 N301_12845 N301_12845 N301_03097 N301_03097 N301_05925 N301_05925 N301_14072 N301_14072 N301_15969 N301_15969 N301_06406 N301_06406 N301_15162 N301_15162 N301_08026 N301_08026 N301_04973 N301_04973 N301_13556 N301_13556 N301_13001 N301_13001 N301_09294 N301_09294 N301_06387 N301_06387 N301_14053 N301_14053 N301_01960 N301_01960 N301_04398 N301_04398 N301_04391 N301_04391 N301_13561 N301_13561 N301_09269 N301_09269 N301_11801 N301_11801 N301_05675 N301_05675 N301_06732 N301_06732 N301_11103 N301_11103 N301_00750 N301_00750 N301_14839 N301_14839 N301_12608 N301_12608 N301_02050 N301_02050 N301_06205 N301_06205 N301_09740 N301_09740 N301_05670 N301_05670 N301_16783 N301_16783 N301_13183 N301_13183 N301_13142 N301_13142 N301_01646 N301_01646 N301_09440 N301_09440 N301_11013 N301_11013 N301_02048 N301_02048 N301_11033 N301_11033 N301_06140 N301_06140 N301_07375 N301_07375 LSM4 LSM4 N301_00075 N301_00075 N301_09739 N301_09739 N301_10040 N301_10040 N301_01589 N301_01589 N301_02686 N301_02686 N301_12189 N301_12189 N301_03931 N301_03931 N301_02599 N301_02599 N301_08362 N301_08362 N301_01298 N301_01298 N301_16552 N301_16552 N301_14351 N301_14351 N301_15103 N301_15103 N301_15042 N301_15042 N301_15713 N301_15713 N301_15040 N301_15040 N301_05445 N301_05445 N301_01297 N301_01297 N301_12145 N301_12145 N301_02452 N301_02452 N301_09846 N301_09846 N301_14806 N301_14806 N301_02431 N301_02431 LSM3 LSM3 N301_12974 N301_12974 N301_11443 N301_11443 N301_06652 N301_06652 N301_11126 N301_11126 N301_14473 N301_14473 N301_14466 N301_14466 N301_02749 N301_02749 N301_16007 N301_16007 N301_06613 N301_06613 N301_00796 N301_00796 N301_15332 N301_15332 N301_05214 N301_05214 N301_11868 N301_11868 N301_02199 N301_02199 N301_04205 N301_04205 N301_02139 N301_02139 N301_08297 N301_08297 N301_04596 N301_04596 N301_12712 N301_12712 LSM5 LSM5 N301_03837 N301_03837 N301_10933 N301_10933 N301_01633 N301_01633 N301_12912 N301_12912 N301_03703 N301_03703 N301_07835 N301_07835 N301_12294 N301_12294 N301_12115 N301_12115 N301_03765 N301_03765 N301_03760 N301_03760
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N301_05415Serine/arginine-rich splicing factor 6. (276 aa)
N301_14366Serine/threonine-protein phosphatase 1 regulatory subunit 10. (498 aa)
N301_01431Uncharacterized protein. (111 aa)
N301_03489Polypyrimidine tract-binding protein 2. (519 aa)
N301_03759GC-rich sequence DNA-binding factor 2. (565 aa)
N301_12360Pre-mRNA-processing-splicing factor 8. (2302 aa)
N301_12306PRKR-interacting protein 1. (189 aa)
N301_01430Splicing factor 3A subunit 2. (205 aa)
N301_03515RNA-binding protein 40. (449 aa)
N301_04081Splicing regulatory glutamine/lysine-rich protein 1. (517 aa)
N301_12315Serine/arginine repetitive matrix protein 2. (559 aa)
N301_12310DNA-directed RNA polymerase II subunit RPB11-a. (69 aa)
N301_03285Pre-mRNA-splicing factor 38A. (312 aa)
N301_01063Coiled-coil domain-containing protein 94. (181 aa)
N301_05106DNA-directed RNA polymerases I, II, and III subunit RPABC3. (126 aa)
N301_11536RING finger protein 113A. (320 aa)
N301_03274Protein mago nashi 2. (146 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (88 aa)
N301_04074Peptidylprolyl isomerase domain and WD repeat-containing protein 1. (581 aa)
N301_01062Heterogeneous nuclear ribonucleoprotein M. (670 aa)
N301_04300U5 small nuclear ribonucleoprotein 200 kDa helicase. (124 aa)
N301_00374U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (239 aa)
N301_14856DNA-directed RNA polymerase II subunit RPB9. (68 aa)
N301_10588Pre-mRNA-processing factor 40 A. (884 aa)
N301_05199Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (63 aa)
N301_01107Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (457 aa)
N301_01623116 kDa U5 small nuclear ribonucleoprotein component. (938 aa)
N301_14896Calcium-regulated heat stable protein 1. (152 aa)
N301_11219RNA-binding motif protein, X chromosome. (388 aa)
N301_01822Microfibrillar-associated protein 1. (413 aa)
N301_07028Survival of motor neuron-related-splicing factor 30. (238 aa)
N301_07920Pre-mRNA-splicing factor 18. (320 aa)
N301_16709Splicing factor 3B subunit 3. (1217 aa)
N301_05956WW domain-binding protein 4. (400 aa)
N301_07954Splicing factor 45. (401 aa)
N301_13616Pre-mRNA-splicing factor syf2. (199 aa)
N301_13264Putative RNA-binding protein Luc7-like 1. (350 aa)
N301_10183DNA-directed RNA polymerases I, II, and III subunit RPABC2. (120 aa)
N301_00096Spliceosome-associated protein CWC15. (230 aa)
N301_01828SURP and G-patch domain-containing protein 1. (620 aa)
N301_01367NK-tumor recognition protein. (1458 aa)
N301_11258Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (108 aa)
N301_02003U4/U6.U5 tri-snRNP-associated protein 2. (334 aa)
N301_12229Transcription elongation regulator 1-like. (1010 aa)
N301_15900Pre-mRNA-processing factor 19. (498 aa)
N301_13087U2 small nuclear ribonucleoprotein B. (214 aa)
N301_08403U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (242 aa)
N301_01309Nuclear cap-binding protein subunit 1. (496 aa)
N301_01395Coiled-coil domain-containing protein 12. (111 aa)
N301_12859Splicing factor 3A subunit 3. (442 aa)
N301_11223HIV Tat-specific factor 1. (394 aa)
N301_12657G patch domain-containing protein 1. (901 aa)
N301_06471Transformer-2 protein alpha. (258 aa)
N301_12852Smad nuclear-interacting protein 1. (320 aa)
N301_13716Zinc finger protein 318. (1290 aa)
N301_09484Small nuclear ribonucleoprotein Sm D2. (60 aa)
N301_12079Zinc finger CCHC-type and RNA-binding motif-containing protein 1. (216 aa)
N301_03725RNA-binding protein 7. (213 aa)
N301_07778Cell division cycle 5-like. (803 aa)
N301_07251Protein FAM32A. (88 aa)
N301_14598Cactin. (629 aa)
N301_14565U6 snRNA-associated Sm-like LSm7. (100 aa)
N301_11111Poly(U)-binding-splicing factor PUF60. (522 aa)
N301_15244Nuclear speckle splicing regulatory protein 1. (543 aa)
N301_10876WD repeat-containing protein 70. (626 aa)
N301_11947Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
N301_04800PAX3-and PAX7-binding protein 1. (805 aa)
N301_05798Splicing factor 3B subunit 4. (407 aa)
N301_05897Putative RNA-binding protein Luc7-like 2. (364 aa)
N301_13801DNA-directed RNA polymerase II subunit RPB3. (248 aa)
N301_03720BUD13. (541 aa)
N301_05922Cold shock domain-containing protein C2. (162 aa)
N301_07245Calcium homeostasis endoplasmic reticulum protein. (842 aa)
N301_14649Uncharacterized protein. (89 aa)
N301_11912Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
N301_12845Y-box-binding protein 3. (259 aa)
N301_03097Peptidyl-prolyl cis-trans isomerase G. (750 aa)
N301_05925PHD finger-like domain-containing protein 5A. (93 aa)
N301_14072U2 snRNP-associated SURP motif-containing protein. (973 aa)
N301_15969WW domain-binding protein 11. (650 aa)
N301_06406Protein SDE2. (197 aa)
N301_15162Splicing regulatory glutamine/lysine-rich protein 1. (509 aa)
N301_08026Putative ATP-dependent RNA helicase DHX35. (691 aa)
N301_04973General transcription factor IIF subunit 2. (240 aa)
N301_13556Cell division cycle and apoptosis regulator protein 1. (1114 aa)
N301_13001U4/U6 small nuclear ribonucleoprotein Prp3. (684 aa)
N301_09294Heterogeneous nuclear ribonucleoprotein A/B. (263 aa)
N301_06387Luc7-like 3. (399 aa)
N301_14053Dynein assembly factor with WDR repeat domains 1. (402 aa)
N301_01960Zinc finger matrin-type protein 5. (170 aa)
N301_04398U2 small nuclear ribonucleoprotein A. (228 aa)
N301_04391Programmed cell death protein 7. (266 aa)
N301_13561Heterogeneous nuclear ribonucleoprotein H3. (341 aa)
N301_09269Putative ATP-dependent RNA helicase DDX46. (997 aa)
N301_11801RNA-binding protein 25. (831 aa)
N301_05675WD40 repeat-containing protein SMU1. (513 aa)
N301_06732DNA-directed RNA polymerase II subunit RPB4. (118 aa)
N301_11103Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (96 aa)
N301_00750Pre-mRNA-splicing factor CWC25. (418 aa)
N301_14839ATP-dependent RNA helicase DHX8. (598 aa)
N301_12608Nucleolar protein 8. (1191 aa)
N301_02050Serine/arginine-rich splicing factor 7. (241 aa)
N301_06205Pre-mRNA-processing factor 6. (917 aa)
N301_09740ATP-dependent RNA helicase A-like. (372 aa)
N301_05670Nuclear cap-binding protein subunit 1. (754 aa)
N301_16783Small nuclear ribonucleoprotein Sm D3. (126 aa)
N301_13183Pleiotropic regulator 1. (513 aa)
N301_13142DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1168 aa)
N301_01646Protein lin-28 B. (235 aa)
N301_09440Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32. (761 aa)
N301_11013DnaJ subfamily C member 8. (228 aa)
N301_02048Serine/arginine-rich splicing factor 7. (148 aa)
N301_11033U5 small nuclear ribonucleoprotein 40 kDa protein. (313 aa)
N301_06140Beta-catenin-like 1. (564 aa)
N301_07375Splicing factor U2AF 35 kDa subunit. (178 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
N301_00075Splicing factor 1. (91 aa)
N301_09739ATP-dependent RNA helicase A. (822 aa)
N301_10040RNA-binding protein Raly. (268 aa)
N301_01589RNA-binding motif protein, X-linked 2. (115 aa)
N301_02686RNA-binding Raly-like. (205 aa)
N301_12189Pre-mRNA-splicing factor RBM22. (402 aa)
N301_03931U6 snRNA-associated Sm-like LSm6. (80 aa)
N301_02599DNA-directed RNA polymerases I, II, and III subunit RPABC4. (55 aa)
N301_08362Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
N301_01298CWF19-like 2. (223 aa)
N301_16552Cold-inducible RNA-binding protein. (167 aa)
N301_14351Poly(RC)-binding protein 3. (341 aa)
N301_15103RNA-binding protein 6. (1095 aa)
N301_15042Poly(RC)-binding protein 4. (307 aa)
N301_15713Zinc finger matrin-type protein 2. (193 aa)
N301_15040RNA-binding protein 5. (740 aa)
N301_05445WD repeat-containing protein 25. (327 aa)
N301_01297CWF19-like 2. (162 aa)
N301_12145Polypyrimidine tract-binding protein 3. (504 aa)
N301_02452Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
N301_09846U4/U6 small nuclear ribonucleoprotein Prp4. (508 aa)
N301_14806Nuclease-sensitive element-binding protein 1. (248 aa)
N301_02431Splicing factor 3B subunit 1. (1292 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
N301_12974Tuftelin-interacting protein 11. (761 aa)
N301_11443Tumor protein p63-regulated gene 1-like. (177 aa)
N301_06652U1 small nuclear ribonucleoprotein C. (157 aa)
N301_11126DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
N301_14473NKAP-like. (285 aa)
N301_14466UPF0428 protein CXorf56. (142 aa)
N301_02749SURP and G-patch domain-containing protein 2. (1107 aa)
N301_16007Serine/arginine-rich splicing factor 4. (446 aa)
N301_06613Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (74 aa)
N301_00796Pre-mRNA-splicing factor SPF27. (164 aa)
N301_15332Protein BUD31. (144 aa)
N301_05214Small nuclear ribonucleoprotein G. (60 aa)
N301_11868U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (460 aa)
N301_02199Uncharacterized protein. (55 aa)
N301_04205Heterogeneous nuclear ribonucleoprotein Q. (426 aa)
N301_02139Pinin. (656 aa)
N301_08297Peptidyl-prolyl cis-trans isomerase-like 2. (479 aa)
N301_04596PCNA-interacting partner. (596 aa)
N301_12712Uncharacterized protein C9orf78. (251 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (76 aa)
N301_03837Poly(RC)-binding protein 3. (306 aa)
N301_10933Crooked neck-like 1. (679 aa)
N301_01633WD repeat-containing protein 53. (354 aa)
N301_12912Serine/threonine-protein kinase PRP4. (997 aa)
N301_03703Proline-rich protein PRCC. (377 aa)
N301_07835Pre-mRNA-splicing factor CWC22. (870 aa)
N301_12294Putative ATP-dependent RNA helicase DHX33. (612 aa)
N301_12115DNA-directed RNA polymerases I, II, and III subunit RPABC1. (194 aa)
N301_03765Pre-mRNA branch site protein p14. (125 aa)
N301_03760GC-rich sequence DNA-binding factor 2. (173 aa)
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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