17 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_03561	Alpha/beta hydrolase domain-containing protein 17A. (301 aa)
	N301_05502	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (258 aa)
	N301_11457	Protein-S-isoprenylcysteine O-methyltransferase. (204 aa)
	N301_11139	GTPase HRas. (189 aa)
	N301_08789	Acyl-protein thioesterase 1. (195 aa)
	N301_11554	Golgin subfamily A member 7B. (153 aa)
	N301_00799	GTPase NRas. (153 aa)
	N301_09100	Alpha/beta hydrolase domain-containing protein 17C. (312 aa)
	N301_06074	Protein Churchill. (53 aa)
	N301_13136	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha. (315 aa)
	N301_11840	Alpha/beta hydrolase domain-containing protein 17B. (288 aa)
	N301_15418	Polyubiquitin-B. (229 aa)
	N301_01767	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (432 aa)
	N301_16236	GTPase KRas. (188 aa)
	N301_14137	Golgin subfamily A member 7. (101 aa)
	N301_08389	Polyubiquitin-C. (228 aa)
	N301_06019	KxDL motif-containing protein 1. (176 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00799	N301_01767	A0A0A0ANM0	A0A0A0AC62	GTPase NRas.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.603
N301_00799	N301_03561	A0A0A0ANM0	A0A099ZYF7	GTPase NRas.	Alpha/beta hydrolase domain-containing protein 17A.	0.502
N301_00799	N301_05502	A0A0A0ANM0	A0A0A0AYZ1	GTPase NRas.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.603
N301_00799	N301_06074	A0A0A0ANM0	A0A0A0ALI2	GTPase NRas.	Protein Churchill.	0.672
N301_00799	N301_08389	A0A0A0ANM0	A0A0A0A481	GTPase NRas.	Polyubiquitin-C.	0.627
N301_00799	N301_09100	A0A0A0ANM0	A0A0A0AME6	GTPase NRas.	Alpha/beta hydrolase domain-containing protein 17C.	0.502
N301_00799	N301_11457	A0A0A0ANM0	A0A0A0AT32	GTPase NRas.	Protein-S-isoprenylcysteine O-methyltransferase.	0.664
N301_00799	N301_11554	A0A0A0ANM0	A0A0A0APJ9	GTPase NRas.	Golgin subfamily A member 7B.	0.579
N301_00799	N301_11840	A0A0A0ANM0	A0A0A0AIV2	GTPase NRas.	Alpha/beta hydrolase domain-containing protein 17B.	0.502
N301_00799	N301_13136	A0A0A0ANM0	A0A0A0AKQ7	GTPase NRas.	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.	0.639
N301_00799	N301_14137	A0A0A0ANM0	A0A0A0A4D3	GTPase NRas.	Golgin subfamily A member 7.	0.579
N301_00799	N301_15418	A0A0A0ANM0	A0A0A0AEJ7	GTPase NRas.	Polyubiquitin-B.	0.627
N301_00799	N301_16236	A0A0A0ANM0	A0A0A0A7C2	GTPase NRas.	GTPase KRas.	0.758
N301_01767	N301_00799	A0A0A0AC62	A0A0A0ANM0	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	GTPase NRas.	0.603
N301_01767	N301_11139	A0A0A0AC62	A0A0A0AS94	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	GTPase HRas.	0.603
N301_01767	N301_11457	A0A0A0AC62	A0A0A0AT32	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Protein-S-isoprenylcysteine O-methyltransferase.	0.406
N301_01767	N301_11554	A0A0A0AC62	A0A0A0APJ9	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Golgin subfamily A member 7B.	0.722
N301_01767	N301_14137	A0A0A0AC62	A0A0A0A4D3	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Golgin subfamily A member 7.	0.722
N301_01767	N301_16236	A0A0A0AC62	A0A0A0A7C2	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	GTPase KRas.	0.603
N301_03561	N301_00799	A0A099ZYF7	A0A0A0ANM0	Alpha/beta hydrolase domain-containing protein 17A.	GTPase NRas.	0.502